Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.9e-189 665.6 314 100.0
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 5.0e-110 401.7 321 63.2
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.5e-109 399.4 328 61.3
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 9.4e-109 397.5 329 62.0
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.6e-108 396.7 323 62.2
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.6e-108 396.7 339 58.4
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.6e-108 396.7 329 60.2
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 8.0e-108 394.4 335 60.9
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.0e-107 394.0 330 60.3
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.0e-107 394.0 335 61.2
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 8.8e-107 391.0 336 61.0
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.2e-106 390.6 335 60.6
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 3.4e-106 389.0 329 62.3
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 5.7e-106 388.3 323 61.0
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.7e-105 386.7 325 58.5
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.7e-105 386.7 350 57.4
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 2.2e-105 386.3 335 58.8
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 2.8e-105 386.0 336 59.5
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 3.7e-105 385.6 329 60.2
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 8.3e-105 384.4 333 60.1
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.1e-104 384.0 327 59.9
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.1e-104 384.0 333 58.9
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 1.8e-104 383.3 318 60.4
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 3.1e-104 382.5 329 58.1
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 3.1e-104 382.5 331 57.7
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 5.4e-104 381.7 332 60.2
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 9.1e-104 380.9 318 58.8
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 1.2e-103 380.6 323 60.7
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.5e-103 379.0 329 60.8
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 4.5e-103 378.6 330 59.7
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 7.7e-103 377.9 337 57.6
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 7.7e-103 377.9 319 60.8
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.0e-102 377.5 330 57.9
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 1.3e-102 377.1 323 58.5
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.7e-102 376.7 333 58.6
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 2.3e-102 376.3 320 59.4
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 2.3e-102 376.3 324 59.6
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 3.8e-102 375.6 327 59.0
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 6.6e-102 374.8 323 60.7
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 1.1e-101 374.0 332 59.0
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.1e-101 374.0 316 59.8
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.5e-101 373.6 330 58.8
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 2.5e-101 372.9 332 57.8
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 3.3e-101 372.5 329 59.0
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 4.3e-101 372.1 347 55.6
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.2e-100 370.5 329 57.4
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.8e-100 369.4 329 57.4
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.8e-100 369.4 328 57.6
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 3.6e-100 369.0 325 56.9
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 3.6e-100 369.0 332 56.3
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 3.6e-100 369.0 335 56.4
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 3.6e-100 369.0 316 59.5
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 6.1e-100 368.2 321 58.6
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 8.0e-100 367.9 329 58.4
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.0e-99 367.5 335 56.7
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.4e-99 367.1 323 59.1
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 1.8e-99 366.7 328 58.2
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 2.3e-99 366.3 329 56.5
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 4.0e-99 365.5 327 58.7
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 5.2e-99 365.2 343 55.7
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 6.8e-99 364.8 328 57.9
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 6.8e-99 364.8 319 59.2
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 1.5e-98 363.6 336 56.5
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.6e-98 362.8 330 57.9
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 3.4e-98 362.5 310 58.7
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 3.4e-98 362.5 326 58.3
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 5.7e-98 361.7 351 55.0
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 7.5e-98 361.3 332 56.3
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 7.5e-98 361.3 316 58.9
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 7.5e-98 361.3 325 56.3
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 2.9e-97 359.4 336 56.0
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 2.9e-97 359.4 331 55.9
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.1e-96 357.5 314 57.0
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.8e-96 356.7 349 53.0
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 1.8e-96 356.7 318 57.2
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 4.1e-96 355.5 335 55.5
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 5.4e-96 355.1 311 59.5
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-95 354.0 309 57.3
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 2.7e-95 352.8 338 54.7
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 5.9e-95 351.7 325 56.3
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 1.5e-93 347.1 364 51.1
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 7.3e-93 344.7 345 52.5
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 1.0e-91 340.9 337 54.3
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.4e-91 340.5 333 54.7
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 5.2e-91 338.6 334 53.9
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 8.9e-91 337.8 311 55.6
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 8.9e-91 337.8 311 55.6
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.0e-90 336.7 338 53.3
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 4.4e-90 335.5 309 56.6
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 2.9e-89 332.8 321 55.5
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 3.2e-88 329.3 393 47.6
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 5.4e-88 328.6 396 47.0
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.2e-87 327.4 306 54.6
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 3.0e-86 322.8 426 44.8
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 3.9e-86 322.4 411 44.8
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.9e-86 322.4 293 58.7
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.1e-85 320.9 413 45.0
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.5e-85 319.7 310 54.8
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 9.5e-85 317.8 411 44.5
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.2e-84 317.4 316 53.2
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.3e-81 307.4 280 57.9
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 8.3e-81 304.7 312 51.3
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 5.4e-80 302.0 320 49.7
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 9.2e-80 301.2 320 49.7
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 6.0e-79 298.5 279 56.3
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 3.1e-75 286.2 310 50.6
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 2.6e-74 283.1 256 57.0
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.4e-74 282.7 273 56.4
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.7e-73 280.4 304 48.7
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 8.4e-73 278.1 312 46.2
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 5.4e-72 275.4 353 45.0
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.0e-70 271.2 291 52.2
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.9e-69 266.9 327 44.6
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 3.3e-69 266.2 251 55.0
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 2.4e-67 260.0 308 45.1
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 4.0e-67 259.2 307 44.6
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.4e-66 255.8 368 38.3
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.2e-65 253.4 314 46.2
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.2e-65 253.4 318 45.9
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 1.1e-64 251.1 485 34.4
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 4.2e-64 249.2 395 40.0
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 1.0e-62 244.6 173 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 2.4e-59 233.4 422 36.3
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 4.4e-58 229.2 318 39.6
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.6e-55 219.2 419 34.1
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 4.6e-55 219.2 308 39.9
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 6.5e-41 172.2 418 30.9
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.9e-40 170.6 219 48.9
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 1.5e-37 161.0 216 46.3
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 4.8e-36 156.0 98 68.4
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 2.0e-34 150.6 164 51.8
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 5.1e-22 109.4 127 45.7
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 4.5e-18 96.3 171 38.0
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 3.2e-16 90.1 243 29.6
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 5.7e-13 79.3 118 40.7
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 1.3e-09 68.2 313 24.3
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 1.1e-08 65.1 315 25.1
Lj3g0026743 Lotus japonicus HOM05D002394 ORTHO05D002508 1.5e-08 64.7 313 23.6
Lsat_1_v5_gn_4_170261 Lactuca sativa HOM05D002394 ORTHO05D002508 1.9e-08 64.3 313 24.0
Psat3g200840 Pisum sativum HOM05D002394 ORTHO05D002508 2.5e-08 63.9 313 24.6
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 3.2e-08 63.5 313 24.9
Atru.chr8.389 Acer truncatum HOM05D002394 ORTHO05D002508 5.5e-08 62.8 313 23.6
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 7.2e-08 62.4 315 24.8
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 7.2e-08 62.4 315 24.8
Migut.K01292 Erythranthe guttata HOM05D002394 ORTHO05D002508 9.4e-08 62.0 317 24.6
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 1.2e-07 61.6 310 24.2
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 1.2e-07 61.6 315 25.1
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 1.2e-07 61.6 310 24.2
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 1.2e-07 61.6 310 24.2
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 1.2e-07 61.6 315 25.1
Duzib264G0540 Durio zibethinus HOM05D002394 ORTHO05D002508 1.2e-07 61.6 313 23.6
TAR371G0698 Trochodendron aralioides HOM05D002394 ORTHO05D002508 1.2e-07 61.6 313 24.9
Gohir.A05G370466 Gossypium hirsutum HOM05D002394 ORTHO05D002508 1.6e-07 61.2 313 24.3
Gohir.A05G370600 Gossypium hirsutum HOM05D002394 ORTHO05D002508 1.6e-07 61.2 313 24.3
Gohir.D04G045000 Gossypium hirsutum HOM05D002394 ORTHO05D002508 1.6e-07 61.2 313 24.3
Gorai.012G050200 Gossypium raimondii HOM05D002394 ORTHO05D002508 1.6e-07 61.2 313 24.3
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 2.1e-07 60.8 315 24.4
Medtr7g012790 Medicago truncatula HOM05D002394 ORTHO05D002508 2.1e-07 60.8 314 23.6
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 2.7e-07 60.5 312 23.1
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 2.7e-07 60.5 315 24.4
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 2.7e-07 60.5 315 24.4
Dinv33199 Davidia involucrata HOM05D002394 ORTHO05D002508 4.7e-07 59.7 313 23.3
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 6.1e-07 59.3 70 50.0
Ca_06809_v3 Cicer arietinum L. HOM05D002394 ORTHO05D002508 8.0e-07 58.9 313 22.7
Thhalv10014230m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 8.0e-07 58.9 315 24.8
Hma1.2p1_0221F.1_g093090 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 8.0e-07 58.9 312 23.1
DCAR_011055 Daucus carota HOM05D002394 ORTHO05D002508 1.0e-06 58.5 132 33.3
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.0e-06 58.5 312 22.8
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 1.0e-06 58.5 130 30.0
Phvul.005G159500 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 1.8e-06 57.8 313 22.7
PGR119G0593 Punica granatum HOM05D002394 ORTHO05D002508 1.8e-06 57.8 128 29.7
HPP92_012503 Vanilla planifolia HOM05D002394 ORTHO05D002508 1.8e-06 57.8 318 23.9
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 2.3e-06 57.4 315 24.1
VMungo1080G1371 Vigna mungo HOM05D002394 ORTHO05D002508 2.3e-06 57.4 313 22.7
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 3.0e-06 57.0 55 50.9
Duzib187G0279 Durio zibethinus HOM05D002394 ORTHO05D002508 4.0e-06 56.6 132 31.8
CSS0019800 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 6.7e-06 55.8 132 31.8
CSS0030202 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 6.7e-06 55.8 132 31.8
vmacro18161 Vaccinium macrocarpon HOM05D002394 ORTHO05D002508 6.7e-06 55.8 132 32.6
BcaB01g05054 Brassica carinata HOM05D002394 ORTHO05D002508 8.8e-06 55.5 129 32.6


User provided reference genes

Program Settings