Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 4.2e-130 468.0 229 100.0
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 4.2e-130 468.0 229 100.0
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.4e-117 425.6 229 88.6
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 5.3e-117 424.5 229 87.8
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 6.9e-117 424.1 229 88.2
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-114 416.8 226 86.7
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.4e-114 416.4 229 85.2
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.4e-114 416.4 229 85.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.4e-114 416.4 227 85.0
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.2e-113 413.3 229 84.7
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.5e-113 411.8 227 86.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 6.0e-113 411.0 229 84.3
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 7.9e-113 410.6 226 85.8
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.0e-112 410.2 229 84.3
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.1e-112 407.9 229 84.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-110 402.9 229 82.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.1e-110 402.5 229 84.7
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 3.7e-110 401.7 226 82.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.5e-108 396.4 226 82.7
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 4.9e-107 391.3 229 81.2
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 8.4e-107 390.6 226 81.9
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 4.2e-106 388.3 221 82.8
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 5.5e-106 387.9 232 80.6
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 9.3e-106 387.1 226 80.5
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.2e-105 386.7 231 81.4
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.1e-105 386.0 226 81.4
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.1e-105 386.0 229 80.3
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.1e-105 386.0 219 80.4
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.5e-105 385.2 229 80.8
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.6e-105 384.8 219 82.2
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.6e-105 384.8 229 79.9
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.3e-104 382.5 228 79.4
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.0e-104 382.1 227 79.7
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 5.1e-104 381.3 228 79.4
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.1e-104 381.3 226 76.5
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 6.7e-104 380.9 226 79.2
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 8.7e-104 380.6 219 80.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.7e-104 380.6 227 80.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-103 379.0 219 81.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-103 379.0 228 78.9
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.5e-103 379.0 227 79.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.3e-103 378.3 226 78.3
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.3e-103 378.3 227 79.3
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 9.6e-103 377.1 227 78.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.1e-102 375.9 227 77.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.7e-102 375.2 246 76.0
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.7e-102 375.2 227 78.4
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 8.2e-102 374.0 248 74.2
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.2e-102 374.0 229 77.3
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.9e-101 370.9 224 78.6
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.2e-100 370.2 224 79.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.6e-100 369.0 234 74.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.5e-100 368.2 235 74.9
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.5e-100 368.2 218 78.9
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.7e-99 366.3 227 74.9
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.7e-99 366.3 227 75.8
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.9e-99 365.5 221 76.9
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.9e-99 365.5 229 75.1
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.9e-99 365.5 227 74.9
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.9e-99 365.5 226 77.0
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.8e-99 365.2 224 78.6
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 8.4e-99 364.0 224 78.6
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-98 363.6 230 79.6
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-98 363.6 230 79.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-98 363.6 224 78.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 7.1e-98 360.9 224 73.7
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 9.3e-98 360.5 235 74.9
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.1e-97 359.4 215 79.5
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.7e-97 359.0 225 73.3
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.7e-97 359.0 230 75.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 4.6e-97 358.2 231 74.5
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.3e-96 356.7 226 75.2
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.8e-96 356.3 230 73.9
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.3e-96 355.9 226 74.3
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 8.7e-96 354.0 226 73.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.7e-96 354.0 225 75.1
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.7e-96 354.0 224 77.2
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.1e-95 353.6 227 74.0
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.3e-95 352.1 227 74.0
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.3e-95 352.1 232 71.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 7.4e-95 350.9 226 73.5
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 7.4e-95 350.9 226 73.0
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 9.7e-95 350.5 226 72.6
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.3e-94 350.1 221 74.2
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.6e-94 349.7 226 72.6
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.2e-94 349.4 226 72.1
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.2e-94 349.4 229 72.5
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 4.8e-94 348.2 230 72.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 6.3e-94 347.8 231 72.3
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 4.1e-93 345.1 231 71.9
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.9e-93 344.4 229 72.9
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 6.9e-93 344.4 226 75.7
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.6e-92 342.4 230 70.0
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.4e-92 342.0 231 71.9
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.4e-92 342.0 231 71.9
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 5.9e-92 341.3 232 71.1
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 7.7e-92 340.9 230 69.6
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-91 340.5 214 73.4
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.0e-91 340.5 214 73.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.0e-91 340.5 222 70.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.3e-91 340.1 227 71.8
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.3e-91 340.1 234 69.7
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.7e-91 339.7 219 72.6
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.9e-91 339.0 214 73.4
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.8e-91 338.6 225 71.1
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 3.8e-91 338.6 214 73.8
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 3.8e-91 338.6 232 70.3
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.5e-91 337.8 214 72.0
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 8.5e-91 337.4 232 71.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.9e-90 336.3 234 70.1
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 2.1e-89 332.8 224 71.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.6e-89 332.0 226 71.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.8e-88 329.7 227 68.7
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.3e-88 329.3 270 62.6
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 3.0e-88 328.9 232 69.0
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.7e-88 327.8 214 70.6
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.7e-86 322.0 229 68.6
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 5.3e-85 318.2 227 66.1
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.4e-84 315.5 229 69.0
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.1e-82 310.5 232 64.2
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 3.6e-81 305.4 230 65.2
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 6.1e-81 304.7 228 64.5
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.8e-80 303.1 178 80.9
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.8e-80 303.1 180 80.6
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.5e-79 300.1 171 81.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.5e-76 290.0 227 63.9
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.2e-75 286.2 232 62.9
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.6e-73 280.0 212 63.7
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.1e-69 267.3 232 59.1
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.4e-69 266.2 162 77.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.0e-68 263.1 159 78.0
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 6.5e-67 258.1 224 54.0
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.3e-64 249.6 184 67.9
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 2.0e-63 246.5 157 71.3
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.8e-61 240.0 186 66.7
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.0e-56 224.2 227 51.1
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 5.2e-56 221.9 135 80.7
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 2.6e-55 219.5 229 49.8
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.8e-54 215.3 186 59.1
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.1e-53 211.1 177 61.6
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.3e-51 206.5 120 77.5
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 6.6e-51 204.9 213 49.3
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.3e-50 202.6 213 48.8
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.2e-49 200.7 132 70.5
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.2e-41 174.1 95 87.4
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.8e-40 170.2 225 47.1
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.9e-38 162.9 210 41.9
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 7.0e-37 158.3 158 54.4
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.7e-35 153.7 99 68.7
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 6.6e-35 151.8 152 50.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 9.8e-31 137.9 213 38.5
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.7e-27 127.1 104 61.5
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.2e-23 114.4 90 60.0
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.4e-23 112.5 80 71.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.3e-22 110.9 194 32.5
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.4e-22 108.6 61 86.9
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.4e-22 108.6 67 79.1
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.9e-21 107.1 60 86.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-21 107.1 60 86.7
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.4e-21 106.7 61 85.2
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 7.8e-20 101.7 62 79.0
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.6e-17 92.8 124 39.5
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.2e-17 92.0 64 67.2
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.9e-16 88.2 59 72.9
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 3.4e-15 86.3 228 29.8
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 1.5e-10 70.9 140 35.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.8e-09 66.6 44 79.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.6e-09 66.2 47 74.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.1e-08 64.7 40 70.0
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.6e-07 60.1 43 65.1
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 3.4e-07 59.7 39 71.8
Glyma.U031114 Glycine max HOM05D004213 ORTHO05D005091 1.3e-06 57.8 39 71.8
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-06 57.8 44 63.6


User provided reference genes

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