Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 5.7e-39 163.7 78 100.0
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 5.7e-39 163.7 78 100.0
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 1.8e-24 115.5 75 74.7
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 2.3e-24 115.2 70 77.1
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 8.8e-24 113.2 75 72.0
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 7.5e-23 110.2 77 71.4
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 9.1e-21 103.2 72 68.1
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 1.6e-20 102.4 71 64.8
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 1.6e-20 102.4 63 71.4
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 2.0e-20 102.1 75 69.3
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 1.0e-19 99.8 53 84.9
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 2.3e-19 98.6 65 67.7
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 2.3e-19 98.6 62 72.6
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 2.3e-19 98.6 73 64.4
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 3.8e-19 97.8 65 69.2
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 1.1e-18 96.3 64 67.2
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 2.5e-18 95.1 61 70.5
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 3.3e-18 94.7 73 60.3
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 7.2e-18 93.6 62 69.4
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 7.2e-18 93.6 62 69.4
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 7.2e-18 93.6 72 63.9
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 1.2e-17 92.8 71 62.0
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.6e-17 92.4 74 62.2
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 1.6e-17 92.4 63 68.3
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 2.1e-17 92.0 63 66.7
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 2.1e-17 92.0 63 66.7
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 2.1e-17 92.0 54 74.1
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 2.8e-17 91.7 56 71.4
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 2.8e-17 91.7 63 68.3
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 2.8e-17 91.7 74 60.8
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 3.6e-17 91.3 65 61.5
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 3.6e-17 91.3 64 67.2
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 3.6e-17 91.3 74 62.2
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 4.7e-17 90.9 75 54.7
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 4.7e-17 90.9 60 71.7
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 8.0e-17 90.1 55 70.9
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 8.0e-17 90.1 74 60.8
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 1.0e-16 89.7 59 67.8
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 1.0e-16 89.7 54 72.2
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 1.0e-16 89.7 75 60.0
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.4e-16 89.4 60 66.7
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 1.4e-16 89.4 59 62.7
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 1.4e-16 89.4 60 68.3
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 1.8e-16 89.0 67 59.7
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 2.3e-16 88.6 56 69.6
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 3.0e-16 88.2 64 62.5
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 3.0e-16 88.2 62 62.9
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 3.0e-16 88.2 67 58.2
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 6.8e-16 87.0 54 68.5
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 6.8e-16 87.0 64 60.9
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 6.8e-16 87.0 76 55.3
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 6.8e-16 87.0 72 56.9
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 6.8e-16 87.0 62 62.9
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 8.9e-16 86.7 65 63.1
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 8.9e-16 86.7 58 65.5
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 1.2e-15 86.3 64 62.5
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 1.5e-15 85.9 54 68.5
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 2.0e-15 85.5 60 58.3
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 2.0e-15 85.5 60 61.7
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 2.0e-15 85.5 65 61.5
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 2.0e-15 85.5 65 61.5
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 2.0e-15 85.5 61 62.3
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 2.6e-15 85.1 57 68.4
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 3.4e-15 84.7 66 59.1
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 3.4e-15 84.7 69 59.4
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 4.4e-15 84.3 73 61.6
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 5.7e-15 84.0 62 61.3
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 9.8e-15 83.2 76 53.9
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 2.2e-14 82.0 56 66.1
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 4.9e-14 80.9 61 60.7
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 6.3e-14 80.5 71 49.3
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 1.1e-13 79.7 67 56.7
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 1.8e-13 79.0 57 61.4
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 2.4e-13 78.6 75 48.0
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 3.2e-13 78.2 64 51.6
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 1.2e-12 76.3 77 49.4
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 5.9e-12 73.9 64 57.8
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 2.9e-11 71.6 51 58.8
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 2.9e-11 71.6 65 46.2
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 9.5e-10 66.6 40 72.5
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 2.1e-09 65.5 45 66.7
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 4.7e-09 64.3 43 69.8
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 1.4e-08 62.8 40 65.0
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 3.1e-08 61.6 37 67.6
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 3.1e-08 61.6 37 70.3
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 6.8e-08 60.5 39 66.7
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 2.0e-07 58.9 38 65.8
PSO700G0322 Papaver somniferum HOM05D066428 ORTHO05D009711 7.5e-07 57.0 70 41.4
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 2.2e-06 55.5 48 54.2
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 3.7e-06 54.7 37 64.9
PSO170G0729 Papaver somniferum HOM05D066428 ORTHO05D009711 3.7e-06 54.7 70 40.0
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 3.7e-06 54.7 33 72.7


User provided reference genes

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