Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 8.6e-183 644.0 466 100.0
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 4.1e-177 625.2 466 97.9
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 2.8e-165 585.9 466 94.4
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 2.9e-98 363.2 460 68.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 5.0e-98 362.5 459 68.6
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 5.0e-90 335.9 454 60.1
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 2.5e-89 333.6 445 52.6
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.0e-79 301.6 466 63.1
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 7.8e-75 285.4 470 38.9
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.3e-71 273.9 445 51.2
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 3.4e-70 270.0 451 47.2
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 1.3e-69 268.1 438 55.9
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 8.3e-69 265.4 449 59.5
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 1.0e-66 258.5 363 70.0
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.5e-65 253.8 441 60.8
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.6e-64 251.1 441 59.9
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.4e-63 248.1 451 43.5
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.2e-62 245.0 348 42.5
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 5.4e-60 236.1 444 59.0
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.0e-58 231.9 454 50.7
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-57 228.0 345 56.5
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 2.5e-57 227.3 438 59.1
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 9.5e-57 225.3 437 53.5
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.2e-56 224.9 437 53.1
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 6.8e-55 219.2 461 56.8
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 2.6e-54 217.2 456 52.2
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 7.6e-54 215.7 441 56.0
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.7e-53 214.5 456 52.4
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 3.7e-53 213.4 460 50.2
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.1e-52 211.8 454 57.7
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 2.4e-52 210.7 454 57.3
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 4.1e-52 209.9 456 51.5
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 7.1e-52 209.1 339 54.9
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 9.2e-52 208.8 452 57.7
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 2.1e-51 207.6 465 56.1
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.0e-50 205.3 456 55.0
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.7e-50 204.5 475 52.4
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.7e-50 204.5 479 54.9
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 2.3e-50 204.1 449 54.6
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 6.6e-50 202.6 437 57.7
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 1.1e-49 201.8 478 43.1
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.9e-49 201.1 451 56.8
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 4.3e-49 199.9 453 56.7
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 2.1e-48 197.6 441 58.0
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 4.7e-48 196.4 449 55.5
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 4.7e-48 196.4 439 56.3
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 6.2e-48 196.1 448 55.8
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 6.2e-48 196.1 448 55.8
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 6.2e-48 196.1 466 44.0
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 8.1e-48 195.7 449 55.7
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.1e-47 195.3 443 56.9
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.1e-47 195.3 462 53.7
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.4e-47 194.1 458 49.3
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 4.0e-47 193.4 447 57.9
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 8.9e-47 192.2 438 43.6
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 8.9e-47 192.2 469 55.2
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.5e-46 191.4 440 55.9
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 3.4e-46 190.3 449 55.7
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 2.9e-45 187.2 353 51.6
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 4.9e-45 186.4 443 56.9
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 8.4e-45 185.7 461 53.8
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 8.4e-45 185.7 438 57.5
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 2.4e-44 184.1 440 54.3
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.4e-44 184.1 440 54.3
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 3.5e-43 180.3 340 52.1
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.3e-40 171.8 461 52.1
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-39 168.3 459 41.8
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 2.6e-38 164.1 432 58.3
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 1.7e-37 161.4 341 34.3
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 8.4e-37 159.1 458 45.6
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.3e-34 151.8 454 52.0
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.3e-34 151.8 340 48.2
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 8.7e-34 149.1 437 51.0
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.3e-32 145.2 340 47.9
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.6e-32 144.8 210 40.5
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.7e-29 134.8 190 38.4
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 9.3e-28 129.0 208 39.4
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.6e-24 118.2 179 41.3
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 1.9e-20 104.8 79 63.3
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.0e-13 82.4 67 58.2
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.9e-09 68.2 50 60.0
Thecc.07G021000 Theobroma cacao HOM05D007725 ORTHO05D009774 7.7e-06 56.2 44 56.8


User provided reference genes

Program Settings