Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 3.4e-145 518.5 291 100.0
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.0e-125 453.8 321 76.3
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 1.2e-94 350.5 263 68.1
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 3.6e-94 349.0 262 66.4
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 2.3e-93 346.3 262 67.6
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 4.5e-89 332.0 262 64.9
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.0e-85 320.9 263 63.1
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 2.3e-85 319.7 272 61.0
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 8.0e-78 294.7 284 57.0
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 4.7e-70 268.9 270 51.1
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 8.0e-70 268.1 270 50.7
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 6.8e-69 265.0 211 65.9
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 7.5e-68 261.5 211 64.5
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 7.0e-66 255.0 271 49.1
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 1.6e-65 253.8 302 45.7
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.3e-64 250.8 270 48.5
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 2.9e-64 249.6 270 48.9
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 5.0e-64 248.8 278 46.8
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.1e-63 247.7 270 47.4
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.5e-63 246.5 270 45.6
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 7.3e-63 245.0 270 47.4
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.8e-62 243.0 287 46.7
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 3.6e-62 242.7 259 47.9
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 1.8e-61 240.4 270 45.2
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 2.3e-61 240.0 270 47.8
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.1e-61 239.6 270 45.2
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 4.0e-61 239.2 270 45.9
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 4.0e-61 239.2 287 43.9
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 1.2e-60 237.7 286 44.4
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.5e-60 237.3 280 42.5
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 2.0e-60 236.9 280 42.1
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.6e-60 236.5 280 42.1
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 5.8e-60 235.3 270 44.4
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 7.5e-60 235.0 283 43.5
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 2.9e-59 233.0 218 57.8
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.9e-59 233.0 272 43.4
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 3.7e-59 232.6 287 44.6
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 2.4e-58 229.9 280 41.8
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 5.4e-58 228.8 269 43.5
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 5.4e-58 228.8 277 45.1
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 7.0e-58 228.4 277 44.8
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 9.2e-58 228.0 269 45.7
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.6e-57 227.3 282 44.3
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.0e-57 226.9 282 42.9
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 4.6e-57 225.7 316 40.8
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 6.0e-57 225.3 269 43.5
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.0e-56 224.6 263 45.6
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.3e-56 224.2 271 44.6
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 8.6e-56 221.5 268 45.1
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.5e-55 220.7 264 43.2
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 3.3e-55 219.5 278 42.4
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 4.7e-54 215.7 266 42.1
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 6.2e-54 215.3 269 43.1
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 5.2e-53 212.2 270 43.0
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 8.9e-53 211.5 260 43.8
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 7.5e-52 208.4 263 40.7
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 3.7e-51 206.1 282 40.1
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 4.9e-51 205.7 270 44.4
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 5.4e-50 202.2 265 42.6
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 2.1e-49 200.3 277 41.9
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 2.7e-49 199.9 261 44.8
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.3e-48 197.6 270 40.0
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 2.3e-48 196.8 269 42.0
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 6.6e-48 195.3 239 43.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 8.6e-48 194.9 270 39.6
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.5e-47 193.4 276 40.2
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 3.3e-47 193.0 270 39.6
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 4.7e-46 189.1 278 39.2
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 8.1e-46 188.3 269 39.0
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 8.1e-46 188.3 278 39.2
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.1e-45 188.0 270 40.0
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.4e-45 187.6 270 38.5
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 8.9e-45 184.9 281 36.3
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 8.9e-45 184.9 276 38.4
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 1.2e-44 184.5 270 38.5
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 7.5e-44 181.8 270 37.8
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 7.5e-44 181.8 228 42.1
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 2.9e-43 179.9 288 35.8
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 4.9e-43 179.1 229 41.0
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 6.4e-43 178.7 286 36.7
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 8.3e-43 178.3 270 39.6
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 1.2e-41 174.5 218 44.0
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 1.5e-39 167.5 270 37.4
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 3.6e-38 162.9 227 42.3
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.8e-37 160.6 300 36.7
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 2.4e-37 160.2 198 44.4
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 4.4e-36 156.0 221 38.5
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 6.0e-33 145.6 197 40.6
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 8.7e-32 141.7 200 39.5
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 3.3e-31 139.8 141 47.5
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.1e-30 137.1 296 33.4
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 8.1e-30 135.2 226 36.3
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.3e-27 127.9 104 58.7
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.9e-26 124.0 113 57.5
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 4.2e-26 122.9 141 46.8
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 7.8e-25 118.6 258 30.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 2.3e-24 117.1 259 30.5
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 2.4e-21 107.1 210 34.8
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.3e-19 101.3 86 54.7
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.7e-19 100.9 139 42.4
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 3.8e-19 99.8 127 41.7
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 4.9e-19 99.4 149 39.6
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 1.9e-18 97.4 133 39.8
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.7e-17 93.6 93 52.7
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 6.5e-11 72.4 103 35.9


User provided reference genes

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