Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 6.7e-207 723.8 365 100.0
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 9.1e-196 686.8 358 97.8
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.4e-166 588.2 358 83.0
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.6e-163 579.7 358 82.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.0e-163 579.3 358 82.7
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.1e-161 573.5 363 81.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.5e-161 573.2 358 81.3
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 4.2e-161 571.6 360 81.7
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.2e-159 564.7 363 79.1
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 6.8e-159 564.3 362 79.6
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.5e-158 563.1 347 81.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 8.3e-157 557.4 363 78.5
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 2.1e-139 499.6 364 72.0
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.5e-139 498.8 361 72.6
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.0e-138 497.3 363 71.9
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 6.6e-138 494.6 359 71.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 2.5e-137 492.7 367 71.1
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 6.2e-136 488.0 363 70.8
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.1e-135 487.3 363 70.5
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.1e-135 487.3 363 71.3
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-135 487.3 363 71.3
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 3.1e-135 485.7 363 71.1
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 5.2e-135 485.0 364 70.1
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.5e-134 483.4 363 71.1
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.6e-134 482.6 365 72.1
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 4.4e-134 481.9 365 70.7
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.9e-133 479.2 358 69.8
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.7e-133 478.8 363 70.5
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 6.4e-133 478.0 363 70.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 8.3e-133 477.6 365 71.0
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.2e-132 475.7 362 68.0
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.6e-131 471.9 429 61.3
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 6.0e-131 471.5 362 68.8
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.9e-130 468.8 359 69.4
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.6e-130 468.0 384 65.4
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.1e-129 467.2 358 69.0
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 3.3e-129 465.7 363 64.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 4.3e-129 465.3 362 70.4
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 9.6e-129 464.2 365 67.1
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 9.6e-129 464.2 324 74.7
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 9.6e-129 464.2 362 67.7
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.8e-128 462.6 366 67.8
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.7e-128 461.8 362 67.7
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 8.1e-128 461.1 358 69.0
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.4e-127 460.3 365 66.8
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.1e-127 459.1 361 68.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.4e-126 455.7 365 65.5
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 7.6e-126 454.5 357 68.6
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.3e-125 453.8 358 62.6
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-125 453.8 348 65.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.9e-125 452.6 358 63.4
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.1e-124 450.7 336 70.5
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.2e-124 449.1 361 67.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 4.2e-124 448.7 324 72.5
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 5.4e-124 448.4 361 66.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 5.4e-124 448.4 364 65.1
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.7e-123 446.0 360 66.1
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.3e-122 443.7 356 65.2
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 3.9e-122 442.2 348 66.7
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 5.1e-122 441.8 324 71.3
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-121 440.7 373 63.0
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.1e-121 440.7 325 71.4
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.1e-121 440.7 349 61.0
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.5e-121 440.3 354 66.1
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.5e-121 439.5 356 66.3
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 3.3e-121 439.1 357 66.4
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.3e-121 439.1 324 70.4
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.3e-121 439.1 324 70.4
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.6e-121 438.3 358 65.6
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.3e-121 438.0 362 65.2
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 9.6e-121 437.6 359 65.2
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.3e-120 437.2 320 72.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.6e-120 436.8 368 64.7
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.8e-120 436.0 321 70.7
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 3.6e-120 435.6 345 67.8
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 8.1e-120 434.5 341 68.0
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.1e-119 434.1 319 66.8
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.4e-119 433.7 344 66.0
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.5e-118 430.3 362 63.3
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.4e-118 428.7 432 56.7
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 9.9e-118 427.6 375 63.7
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.1e-116 424.1 356 62.6
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.4e-116 423.7 358 64.0
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.4e-116 423.7 359 63.5
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.2e-116 422.5 358 61.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 4.2e-116 422.2 354 64.1
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 7.1e-116 421.4 360 61.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 2.3e-114 416.4 356 62.9
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.0e-114 416.0 325 68.0
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 3.9e-114 415.6 358 58.7
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.3e-113 412.1 335 64.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.8e-112 409.5 345 64.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 6.2e-112 408.3 355 61.1
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.5e-110 403.7 340 63.5
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.9e-108 396.7 356 60.7
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.2e-108 395.6 327 65.7
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-107 394.0 349 61.6
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.6e-107 393.7 356 59.3
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.6e-107 393.7 326 64.7
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 3.5e-107 392.5 320 65.9
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 7.9e-107 391.3 320 65.9
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.3e-106 390.6 356 59.3
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.8e-106 390.2 320 65.3
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.8e-106 390.2 356 58.4
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 3.9e-106 389.0 356 59.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-105 387.5 356 59.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-105 387.5 319 63.9
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.5e-105 387.1 320 65.3
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-105 386.7 342 60.2
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.3e-105 386.0 365 59.7
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 3.7e-104 382.5 342 60.5
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.7e-104 382.5 226 77.4
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.4e-103 379.8 342 60.2
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.3e-101 374.0 294 69.0
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.7e-99 366.3 365 57.3
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 7.9e-99 364.8 272 65.8
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.8e-98 363.6 295 67.1
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.7e-97 358.6 352 60.8
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 7.4e-97 358.2 350 49.1
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 9.6e-97 357.8 290 68.3
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 4.8e-96 355.5 273 64.8
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.1e-95 354.4 242 69.4
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.8e-95 353.6 415 48.0
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.0e-93 345.5 345 55.7
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.5e-92 343.2 239 66.1
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-90 335.5 336 53.6
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.7e-90 334.7 280 59.3
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.5e-89 334.0 190 76.8
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.5e-89 334.0 295 63.4
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.5e-89 333.2 288 64.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.7e-88 329.3 356 53.7
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 6.3e-88 328.6 322 52.2
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.5e-86 323.9 332 54.2
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 7.7e-86 321.6 356 52.5
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 3.8e-85 319.3 327 48.9
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 6.1e-83 312.0 324 54.0
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.0e-82 309.7 320 54.1
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 5.1e-82 308.9 360 53.3
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 8.8e-82 308.1 321 54.2
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 7.4e-81 305.1 327 54.1
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 2.8e-80 303.1 322 53.7
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 4.8e-80 302.4 313 50.5
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.6e-78 296.6 325 52.3
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.3e-77 294.3 322 53.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.9e-76 290.4 326 50.9
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 2.5e-76 290.0 325 50.8
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 9.4e-76 288.1 239 57.7
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.2e-75 287.7 325 54.2
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.6e-75 287.3 321 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 3.0e-74 283.1 319 50.2
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.3e-73 279.6 357 44.5
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 9.7e-73 278.1 323 51.7
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 8.2e-72 275.0 324 49.4
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.1e-71 274.6 330 48.8
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.8e-64 250.0 177 66.1
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 5.3e-63 245.7 219 50.2
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-59 234.2 355 43.7
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 4.7e-59 232.6 364 41.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 9.4e-52 208.4 318 42.5
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.8e-50 204.1 154 63.0
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 2.0e-49 200.7 345 36.8
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.7e-48 196.4 112 80.4
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.5e-46 189.9 93 91.4
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.0e-45 188.3 113 77.9
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.7e-16 91.3 102 40.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.1e-14 84.3 48 75.0
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-13 81.3 38 89.5
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 3.6e-11 73.6 63 68.3
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 2.9e-08 63.9 46 69.6
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 2.9e-08 63.9 45 64.4
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 8.4e-08 62.4 43 72.1
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 8.4e-08 62.4 43 72.1
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.1e-07 62.0 85 45.9
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 1.9e-07 61.2 47 66.0
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 2.4e-07 60.8 50 64.0
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 7.1e-07 59.3 32 84.4
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 1.6e-06 58.2 36 72.2


User provided reference genes

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