Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.0e-282 976.1 507 100.0
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 8.4e-224 780.4 517 83.9
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 2.6e-193 679.1 418 84.0
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.6e-193 679.1 421 83.6
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.6e-193 677.6 417 83.9
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 8.4e-192 674.1 418 82.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 9.3e-191 670.6 417 83.5
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.6e-190 669.8 417 82.0
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 3.1e-186 655.6 419 80.4
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.3e-184 650.2 419 79.7
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.2e-184 649.4 418 80.1
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.5e-183 646.0 419 80.2
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.4e-178 629.4 418 77.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.9e-177 624.8 418 77.0
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.4e-175 620.2 418 76.3
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 5.5e-175 618.2 418 75.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.1e-174 616.3 418 75.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 1.4e-173 613.6 418 75.1
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.8e-171 605.9 417 74.6
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 8.2e-171 604.4 420 74.5
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 8.2e-171 604.4 418 73.9
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 7.7e-169 597.8 417 74.1
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.0e-168 597.4 417 73.9
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.7e-168 596.7 418 74.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 3.8e-168 595.5 417 73.4
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.2e-167 592.0 418 73.4
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 5.5e-167 591.7 418 74.9
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 7.2e-167 591.3 430 71.4
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 9.4e-167 590.9 419 72.3
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.6e-166 589.0 418 72.0
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 4.7e-166 588.6 418 72.2
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 3.9e-165 585.5 418 71.8
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 5.2e-165 585.1 421 72.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 8.8e-165 584.3 418 72.2
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.5e-164 583.6 418 73.4
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 2.0e-164 583.2 413 71.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 5.7e-164 581.6 421 72.0
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 8.2e-163 577.8 421 71.0
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-162 577.4 422 70.9
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-162 577.0 421 70.8
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-162 577.0 421 70.8
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 1.4e-162 577.0 422 70.9
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.8e-162 576.6 439 69.0
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 5.3e-162 575.1 430 69.5
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.2e-161 573.9 419 70.4
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.0e-160 570.9 441 68.3
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.3e-160 570.5 492 62.8
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.7e-160 570.1 419 70.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.9e-160 569.3 418 69.4
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 6.5e-160 568.2 418 69.1
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.5e-159 567.0 419 69.2
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.2e-158 563.9 420 69.0
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.2e-158 563.9 442 68.1
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 3.6e-158 562.4 420 69.5
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 6.1e-158 561.6 419 68.5
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 8.0e-158 561.2 418 69.1
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.3e-157 559.7 420 69.0
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.0e-157 559.3 419 68.3
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.2e-156 557.4 418 68.2
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 1.4e-154 550.4 423 67.4
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 4.1e-154 548.9 406 70.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.2e-153 547.4 416 69.0
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.7e-153 544.7 386 73.3
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.2e-150 537.3 423 65.7
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 2.7e-150 536.2 417 67.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.6e-148 529.6 365 74.0
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.5e-148 528.1 417 68.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 7.5e-148 528.1 367 76.3
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.3e-147 527.3 427 67.7
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.4e-146 523.1 380 70.5
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.1e-146 522.3 387 70.0
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.1e-146 522.3 389 69.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.6e-145 520.4 474 58.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.6e-145 520.4 416 67.1
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 2.0e-145 520.0 418 67.0
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.5e-145 519.2 375 70.1
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.7e-144 516.9 426 65.0
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 2.3e-144 516.5 419 64.9
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.2e-142 510.8 418 65.1
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 2.1e-142 510.0 418 64.8
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.4e-140 502.7 454 60.4
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.2e-139 500.0 395 66.8
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-138 497.7 433 62.4
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.8e-138 496.9 418 65.6
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 4.9e-131 472.2 422 60.2
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.4e-130 469.9 422 58.8
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 9.2e-130 468.0 371 67.9
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.0e-128 464.5 416 61.1
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-126 456.8 271 90.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 4.0e-125 452.6 424 60.6
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 8.9e-125 451.4 415 57.1
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 2.9e-123 446.4 405 59.5
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 4.1e-122 442.6 374 62.8
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.2e-122 441.4 456 55.5
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.2e-121 441.0 382 60.5
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.8e-118 429.9 413 59.1
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.8e-118 429.9 368 65.8
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.7e-118 429.1 457 54.7
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 4.0e-117 426.0 418 54.5
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.5e-116 424.1 433 57.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-114 417.9 413 57.9
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 6.2e-110 402.1 379 58.6
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.0e-108 397.1 287 69.7
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.2e-98 362.8 333 60.7
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 5.4e-98 362.5 416 48.6
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.5e-97 359.8 427 47.8
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.9e-96 356.3 261 72.8
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 6.6e-96 355.5 250 72.4
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 3.1e-93 346.7 442 44.8
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 9.9e-92 341.7 255 67.1
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.4e-90 337.8 262 66.4
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.4e-87 325.5 249 71.5
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.2e-81 308.1 388 45.9
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.2e-75 287.3 162 93.2
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 7.4e-71 272.3 233 65.7
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.7e-65 253.8 423 41.6
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.3e-63 246.9 332 46.4
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 7.4e-63 245.7 217 64.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 6.5e-59 232.6 156 77.6
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.3e-56 224.2 158 74.1
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.0e-55 221.1 373 39.7
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.6e-55 220.7 198 58.1
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.3e-47 193.7 132 76.5
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 7.7e-44 182.6 162 63.0
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 7.2e-42 176.0 556 28.8
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.3e-38 165.2 124 71.8
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 5.0e-35 153.3 96 82.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.4e-32 145.2 418 31.6
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.1e-29 135.6 106 66.0
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.5e-23 115.2 142 48.6
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.3e-22 112.1 476 26.9
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 2.0e-20 104.8 89 64.0
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 4.6e-20 103.6 69 76.8
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.5e-18 98.6 86 58.1
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.3e-18 96.3 85 62.4
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.3e-18 96.3 85 62.4
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 3.6e-17 94.0 56 83.9
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.8e-16 91.7 62 79.0
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.8e-16 91.7 62 79.0
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 5.2e-16 90.1 87 48.3
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 5.8e-15 86.7 92 57.6
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 4.6e-12 77.0 80 58.8
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.0e-11 74.3 80 56.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.6e-10 70.1 55 67.3
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.1e-08 64.3 48 64.6
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 4.0e-08 63.9 38 78.9
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.6e-07 61.2 39 74.4
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 8.3e-06 56.2 39 69.2


User provided reference genes

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