Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L8ME0D Arachis hypogaea HOM05D002039 ORTHO05D026939 2.5e-56 221.9 112 100.0
arahy.Tifrunner.gnm1.ann1.WU9FE7 Arachis hypogaea HOM05D002039 ORTHO05D026939 1.4e-51 206.1 112 94.6
arahy.Tifrunner.gnm1.ann1.V7QGVL Arachis hypogaea HOM05D002039 ORTHO05D026939 3.2e-51 204.9 104 98.1
ClCG03G008070 Citrullus lanatus HOM05D002039 ORTHO05D005369 2.0e-24 115.9 90 63.3
Hund23784 Selenicereus undatus HOM05D002039 ORTHO05D005369 1.6e-21 106.3 71 70.4
arahy.Tifrunner.gnm1.ann1.TT4JII Arachis hypogaea HOM05D002039 ORTHO05D005369 1.3e-20 103.2 49 95.9
arahy.Tifrunner.gnm1.ann1.DG5TA8 Arachis hypogaea HOM05D002039 ORTHO05D083419 2.9e-20 102.1 73 71.2
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 3.2e-19 98.6 67 71.6
CDE02G1413 Ceratophyllum demersum HOM05D002039 ORTHO05D026939 6.7e-17 90.9 93 50.5
FAN11G1708 Fragaria x ananassa HOM05D002039 ORTHO05D005369 7.7e-13 77.4 42 83.3
FAN16G0204 Fragaria x ananassa HOM05D002039 ORTHO05D005369 7.7e-13 77.4 42 83.3
FAN21G1480 Fragaria x ananassa HOM05D002039 ORTHO05D005369 7.7e-13 77.4 42 83.3
FAN25G2208 Fragaria x ananassa HOM05D002039 ORTHO05D005369 2.9e-12 75.5 41 82.9
Nn1g04176 Nelumbo nucifera HOM05D002039 ORTHO05D005369 3.8e-12 75.1 52 71.2
Lsat_1_v5_gn_6_52801 Lactuca sativa HOM05D004747 ORTHO05D006051 1.9e-11 72.8 48 72.9
arahy.Tifrunner.gnm1.ann1.61YHCL Arachis hypogaea HOM05D002039 ORTHO05D005369 2.5e-11 72.4 32 96.9
arahy.Tifrunner.gnm1.ann1.MJ6K6I Arachis hypogaea HOM05D000112 ORTHO05D012547 2.7e-10 68.9 50 68.0
CiPaw.09G062500 Carya illinoinensis HOM05D002039 ORTHO05D005369 1.4e-09 66.6 35 82.9
Ca_00353_v3 Cicer arietinum L. HOM05D002039 ORTHO05D005369 2.3e-09 65.9 32 87.5
Oeu029368.1 Olea europaea HOM05D002039 ORTHO05D005369 3.0e-09 65.5 83 41.0
Gohir.D09G072900 Gossypium hirsutum HOM05D002039 ORTHO05D005369 4.0e-09 65.1 37 75.7
PGR004G1346 Punica granatum HOM05D002039 ORTHO05D005369 5.2e-09 64.7 33 84.8
Sp1g24580 Schrenkiella parvula HOM05D002039 ORTHO05D005369 5.2e-09 64.7 33 81.8
Hund21210 Selenicereus undatus HOM05D002039 ORTHO05D005369 5.2e-09 64.7 33 84.8
Aa31sc86G80 Aethionema arabicum HOM05D002039 ORTHO05D005369 8.8e-09 63.9 34 79.4
AT1G28340 Arabidopsis thaliana HOM05D002039 ORTHO05D005369 8.8e-09 63.9 34 79.4
Carub.0001s2680 Capsella rubella HOM05D002039 ORTHO05D005369 8.8e-09 63.9 34 79.4
Duzib147G1056 Durio zibethinus HOM05D000094 ORTHO05D001414 8.8e-09 63.9 72 48.6
Thhalv10007074m.g Eutrema salsugineum HOM05D002039 ORTHO05D005369 8.8e-09 63.9 34 79.4
Glyma.13G176900 Glycine max HOM05D002039 ORTHO05D005369 1.2e-08 63.5 34 79.4
Atru.chr10.1813 Acer truncatum HOM05D002039 ORTHO05D005369 1.5e-08 63.2 32 84.4
Actinidia16564 Actinidia chinensis HOM05D002039 ORTHO05D005369 1.5e-08 63.2 32 84.4
Ah.09g237510 Amaranthus hybridus HOM05D002039 ORTHO05D005369 1.5e-08 63.2 32 84.4
Dinv17339 Davidia involucrata HOM05D002039 ORTHO05D005369 1.5e-08 63.2 32 84.4
Medtr2g014290 Medicago truncatula HOM05D002039 ORTHO05D005369 1.5e-08 63.2 32 84.4
Peaxi162Scf00461g01116 Petunia axillaris HOM05D002039 ORTHO05D005369 1.5e-08 63.2 29 89.7
Sc05g0007500 Simmondsia chinensis HOM05D002039 ORTHO05D005369 1.5e-08 63.2 32 84.4
CARHR027830 Cardamine hirsuta HOM05D002039 ORTHO05D005369 2.0e-08 62.8 29 89.7
Glyma.07G199500 Glycine max HOM05D002039 ORTHO05D005369 2.0e-08 62.8 34 76.5
MD10G1291000 Malus domestica HOM05D002039 ORTHO05D005369 2.0e-08 62.8 28 92.9
Prupe.4G051100 Prunus persica HOM05D002039 ORTHO05D005369 2.0e-08 62.8 28 92.9
CAN.G189.50 Capsicum annuum HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
CAN.G529.28 Capsicum annuum HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
Eucgr.E03253 Eucalyptus grandis HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
Hma1.2p1_0208F.1_g088390 Hydrangea macrophylla HOM05D002039 ORTHO05D005369 2.6e-08 62.4 32 81.2
Lj4g0026541 Lotus japonicus HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
Peaxi162Scf00243g00056 Petunia axillaris HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
Solyc03g006330.4 Solanum lycopersicum HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
Sopen03g002340 Solanum pennellii HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
PGSC0003DMG400012816 Solanum tuberosum HOM05D002039 ORTHO05D005369 2.6e-08 62.4 28 92.9
THA.LOC104820560 Tarenaya hassleriana HOM05D002039 ORTHO05D005369 2.6e-08 62.4 31 83.9
TPR.G16528 Trifolium pratense HOM05D002039 ORTHO05D005369 2.6e-08 62.4 31 83.9
Nitab4.5_0011102g0020 Nicotiana tabacum HOM05D002039 ORTHO05D005369 3.4e-08 62.0 32 81.2
SGA_v2.0_scaffold100G29704 Striga asiatica HOM05D002039 ORTHO05D005369 3.4e-08 62.0 32 84.4
arahy.Tifrunner.gnm1.ann1.Y4UZBH Arachis hypogaea HOM05D002039 ORTHO05D082410 4.4e-08 61.6 45 75.6
CSS0034765 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 4.4e-08 61.6 28 92.9
Manes.17G048100 Manihot esculenta HOM05D002039 ORTHO05D005369 4.4e-08 61.6 71 46.5
Nitab4.5_0002219g0040 Nicotiana tabacum HOM05D002039 ORTHO05D005369 4.4e-08 61.6 28 89.3
Nitab4.5_0008414g0030 Nicotiana tabacum HOM05D002039 ORTHO05D005369 4.4e-08 61.6 28 89.3
CANSAT35G1633 Cannabis sativa HOM05D002039 ORTHO05D005369 5.7e-08 61.2 27 92.6
ECA234G4172 Erigeron canadensis HOM05D002039 ORTHO05D005369 5.7e-08 61.2 30 86.7
Nitab4.5_0000516g0120 Nicotiana tabacum HOM05D002039 ORTHO05D005369 5.7e-08 61.2 28 89.3
Phvul.002G230800 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 5.7e-08 61.2 32 81.2
VMungo0251G3185 Vigna mungo HOM05D002039 ORTHO05D005369 5.7e-08 61.2 32 81.2
Cpa.g.sc27.19 Carica papaya HOM05D002039 ORTHO05D005369 7.5e-08 60.8 32 81.2
AUR62014853 Chenopodium quinoa HOM05D002039 ORTHO05D005369 7.5e-08 60.8 35 77.1
AUR62017049 Chenopodium quinoa HOM05D002039 ORTHO05D005369 7.5e-08 60.8 35 77.1
Haze_06398 Corylus avellana HOM05D002039 ORTHO05D005369 7.5e-08 60.8 32 84.4
SalBow8G0156 Salvia bowleyana HOM05D002039 ORTHO05D005369 7.5e-08 60.8 95 38.9
Solyc02g077850.3 Solanum lycopersicum HOM05D002039 ORTHO05D005369 7.5e-08 60.8 28 89.3
Sopen02g022710 Solanum pennellii HOM05D002039 ORTHO05D005369 7.5e-08 60.8 28 89.3
PGSC0003DMG400029712 Solanum tuberosum HOM05D002039 ORTHO05D005369 7.5e-08 60.8 28 89.3
TWI38G1755 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 7.5e-08 60.8 32 81.2
CSS0048533 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 9.8e-08 60.5 32 81.2
Eucgr.D00605 Eucalyptus grandis HOM05D002039 ORTHO05D005369 9.8e-08 60.5 32 81.2
Glyma.13G236700 Glycine max HOM05D002039 ORTHO05D005369 9.8e-08 60.5 32 81.2
Glyma.15G076900 Glycine max HOM05D002039 ORTHO05D005369 9.8e-08 60.5 32 81.2
Lalb_Chr20g0121641 Lupinus albus HOM05D002039 ORTHO05D005369 9.8e-08 60.5 27 92.6
Phvul.006G183300 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 9.8e-08 60.5 32 81.2
VMungo0540G2072 Vigna mungo HOM05D002039 ORTHO05D005369 9.8e-08 60.5 32 81.2
Cfa000513 Carpinus fangiana HOM05D002039 ORTHO05D005369 1.3e-07 60.1 32 81.2
SGA_v2.0_scaffold22G09679 Striga asiatica HOM05D002039 ORTHO05D005369 1.3e-07 60.1 32 81.2
arahy.Tifrunner.gnm1.ann1.Z7YHJK Arachis hypogaea HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 81.2
MSTRG.15860 Avicennia marina HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 81.2
Ciclev10014609m.g Citrus clementina HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 81.2
Cc02_g13670 Coffea canephora HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 81.2
Nn1g06448 Nelumbo nucifera HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 78.1
QL05p042020 Quercus lobata HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 81.2
GSVIVG01021096001 Vitis vinifera HOM05D002039 ORTHO05D005369 1.7e-07 59.7 32 81.2
Nn4g23736 Nelumbo nucifera HOM05D002039 ORTHO05D005834 2.2e-07 59.3 66 45.5
AL1G41940 Arabidopsis lyrata HOM05D002039 ORTHO05D005369 2.8e-07 58.9 31 80.6
MELO3C002622.2 Cucumis melo HOM05D002039 ORTHO05D005369 2.8e-07 58.9 30 83.3
CsaV3_1G012480 Cucumis sativus L. HOM05D002039 ORTHO05D005369 2.8e-07 58.9 30 83.3
Lsat_1_v5_gn_4_52181 Lactuca sativa HOM05D002039 ORTHO05D005369 2.8e-07 58.9 31 80.6
Psat1g203480 Pisum sativum HOM05D002039 ORTHO05D005369 2.8e-07 58.9 30 83.3
Psat4g204200 Pisum sativum HOM05D002039 ORTHO05D005369 2.8e-07 58.9 30 83.3
Potri.011G056800 Populus trichocarpa HOM05D002039 ORTHO05D005369 2.8e-07 58.9 32 78.1
MSTRG.7349 Avicennia marina HOM05D002039 ORTHO05D005369 3.7e-07 58.5 32 81.2
HanXRQChr16g0517651 Helianthus annuus HOM05D002039 ORTHO05D005369 3.7e-07 58.5 30 83.3
Migut.M01118 Erythranthe guttata HOM05D002039 ORTHO05D005369 4.8e-07 58.2 32 78.1
MBI02_g32628_MAGBIO Magnolia biondii HOM05D002039 ORTHO05D005369 4.8e-07 58.2 32 78.1
RcHm_v2.0_Chr5g0008961 Rosa chinensis HOM05D002039 ORTHO05D005369 4.8e-07 58.2 28 85.7
EL10Ac8g20423 Beta vulgaris HOM05D002039 ORTHO05D005369 6.3e-07 57.8 33 75.8
COL.COLO4_31433 Corchorus olitorius HOM05D002039 ORTHO05D005369 6.3e-07 57.8 32 78.1
Duzib235G0008 Durio zibethinus HOM05D002039 ORTHO05D005369 6.3e-07 57.8 32 78.1
Gohir.A09G073200 Gossypium hirsutum HOM05D002039 ORTHO05D005369 6.3e-07 57.8 32 78.1
Gorai.006G087900 Gossypium raimondii HOM05D002039 ORTHO05D005369 6.3e-07 57.8 32 78.1
Thecc.06G183000 Theobroma cacao HOM05D002039 ORTHO05D005369 6.3e-07 57.8 32 78.1
ATR0763G230 Amborella trichopoda HOM05D002039 ORTHO05D005369 1.1e-06 57.0 31 80.6
FAN02G2473 Fragaria x ananassa HOM05D001169 ORTHO05D001002 1.1e-06 57.0 75 38.7
Lj6g0006997 Lotus japonicus HOM05D002039 ORTHO05D005369 1.1e-06 57.0 31 77.4
Potri.004G047300 Populus trichocarpa HOM05D002039 ORTHO05D005369 1.1e-06 57.0 32 78.1
Sabra04G0029600 Salix brachista HOM05D002039 ORTHO05D005369 1.1e-06 57.0 32 78.1
TAR624G0166 Trochodendron aralioides HOM05D002039 ORTHO05D005369 1.1e-06 57.0 32 78.1
TAR624G0590 Trochodendron aralioides HOM05D002039 ORTHO05D005369 1.1e-06 57.0 32 78.1
CiPaw.10G051500 Carya illinoinensis HOM05D002039 ORTHO05D005369 1.4e-06 56.6 34 73.5
FvH4_6g22790 Fragaria vesca HOM05D001169 ORTHO05D001002 1.4e-06 56.6 75 38.7
FAN14G1472 Fragaria x ananassa HOM05D001169 ORTHO05D001002 1.4e-06 56.6 75 38.7
Rhsim13G0179800 Rhododendron simsii HOM05D002039 ORTHO05D005369 1.4e-06 56.6 30 83.3
TWI38G1298 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 1.4e-06 56.6 30 80.0
TAR626G0341 Trochodendron aralioides HOM05D002039 ORTHO05D005369 1.4e-06 56.6 31 77.4
Glyma.14G173400 Glycine max HOM05D000053 ORTHO05D000035 1.8e-06 56.2 78 39.7
BcaC05g26843 Brassica carinata HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 74.2
A09p37720 Brassica napus HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 74.2
C05p27240 Brassica napus HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 74.2
BolC5t31438H Brassica oleracea HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 74.2
BraA09t39283Z Brassica rapa HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 74.2
Gohir.A10G027300 Gossypium hirsutum HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 77.4
Gohir.D10G027700 Gossypium hirsutum HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 77.4
Gorai.011G029600 Gossypium raimondii HOM05D002039 ORTHO05D005369 2.4e-06 55.8 31 77.4
CDE01G0283 Ceratophyllum demersum HOM05D002039 ORTHO05D005369 4.1e-06 55.1 99 35.4
RcHm_v2.0_Chr3g0480401 Rosa chinensis HOM05D001169 ORTHO05D001002 4.1e-06 55.1 75 38.7
BcaB02g08649 Brassica carinata HOM05D000053 ORTHO05D000035 5.4e-06 54.7 67 43.3
BcaB07g32450 Brassica carinata HOM05D002039 ORTHO05D005369 5.4e-06 54.7 31 77.4
PSO541G3961 Papaver somniferum HOM05D002039 ORTHO05D005369 5.4e-06 54.7 28 78.6
PSO675G8387 Papaver somniferum HOM05D002039 ORTHO05D005369 5.4e-06 54.7 28 78.6
Duzib160G0651 Durio zibethinus HOM05D002039 ORTHO05D005369 7.0e-06 54.3 32 75.0
PSO063G6415 Papaver somniferum HOM05D002039 ORTHO05D005834 9.1e-06 53.9 112 31.2
HPP92_014191 Vanilla planifolia HOM05D002039 ORTHO05D005369 9.1e-06 53.9 35 68.6


User provided reference genes

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