Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.1e-40 169.5 82 100.0
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-39 165.6 80 98.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 1.3e-20 102.8 82 61.0
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.1e-20 102.1 84 61.9
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 7.6e-18 93.6 81 56.8
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.8e-17 91.3 82 58.5
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.4e-16 89.4 81 54.3
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.9e-16 89.0 79 60.8
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 4.2e-16 87.8 82 57.3
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 4.2e-16 87.8 77 54.5
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-15 86.3 78 57.7
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-15 86.3 80 52.5
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 2.1e-15 85.5 75 58.7
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-15 85.5 81 54.3
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 2.1e-15 85.5 80 53.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.0e-14 83.2 80 55.0
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 5.1e-14 80.9 80 53.8
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.7e-14 80.5 77 57.1
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.1e-13 79.7 79 51.9
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-13 78.6 81 54.3
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-13 78.6 81 54.3
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.6e-12 75.9 80 53.8
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.8e-12 75.1 73 47.9
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.8e-12 75.1 72 54.2
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.7e-12 74.7 80 53.8
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 3.7e-12 74.7 79 53.2
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 3.7e-12 74.7 78 52.6
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 3.7e-12 74.7 79 50.6
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.2e-12 73.9 80 48.8
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 8.2e-12 73.6 80 48.8
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 8.2e-12 73.6 69 56.5
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.2e-12 73.6 80 48.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.4e-11 72.8 64 53.1
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.4e-11 72.8 80 51.2
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 2.4e-11 72.0 78 52.6
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 2.4e-11 72.0 78 52.6
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 6.9e-11 70.5 81 48.1
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 6.9e-11 70.5 72 48.6
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 9.0e-11 70.1 80 46.2
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 9.0e-11 70.1 73 53.4
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.5e-10 69.3 69 49.3
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 2.0e-10 68.9 50 64.0
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 3.4e-10 68.2 58 55.2
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 4.5e-10 67.8 80 48.8
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 4.5e-10 67.8 80 48.8
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 7.6e-10 67.0 80 46.2
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 7.6e-10 67.0 81 45.7
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.0e-09 66.6 50 60.0
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.0e-09 66.6 46 65.2
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.0e-09 66.6 71 46.5
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.0e-09 66.6 82 48.8
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.3e-09 66.2 76 44.7
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.7e-09 65.9 92 42.4
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.9e-09 65.1 82 47.6
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 3.8e-09 64.7 61 49.2
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 8.4e-09 63.5 70 54.3
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.4e-09 63.5 83 48.2
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.1e-08 63.2 74 43.2
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.1e-08 63.2 82 46.3
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 1.4e-08 62.8 68 47.1
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.4e-08 62.8 71 43.7
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 2.5e-08 62.0 71 47.9
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.5e-08 62.0 78 47.4
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.5e-08 62.0 77 45.5
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 3.2e-08 61.6 79 40.5
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 4.2e-08 61.2 79 44.3
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 4.2e-08 61.2 79 44.3
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 4.2e-08 61.2 51 60.8
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 7.1e-08 60.5 81 44.4
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 9.3e-08 60.1 71 40.8
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.2e-07 59.7 58 48.3
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.1e-07 58.9 72 45.8
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.1e-07 58.9 76 39.5
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 2.1e-07 58.9 75 40.0
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 2.7e-07 58.5 66 47.0
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 2.7e-07 58.5 83 48.2
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.7e-07 58.5 81 43.2
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.7e-07 58.5 82 42.7
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 4.6e-07 57.8 79 43.0
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-07 57.8 80 43.8
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 6.1e-07 57.4 68 51.5
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.0e-06 56.6 66 48.5
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.0e-06 56.6 66 48.5
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.0e-06 56.6 66 48.5
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.3e-06 56.2 66 48.5
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.3e-06 56.2 74 44.6
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.3e-06 56.2 81 42.0
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.8e-06 55.8 44 56.8
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 2.3e-06 55.5 68 39.7
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 2.3e-06 55.5 64 48.4
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 3.9e-06 54.7 68 39.7
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 3.9e-06 54.7 64 46.9
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 3.9e-06 54.7 64 46.9
QL02p025882 Quercus lobata HOM05D013878 ORTHO05D007342 5.1e-06 54.3 86 38.4
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 8.7e-06 53.5 56 48.2


User provided reference genes

Program Settings