Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.6e-222 775.8 385 100.0
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.7e-192 676.0 385 89.6
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 6.5e-136 488.0 390 68.2
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 8.5e-136 487.6 364 69.2
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 2.6e-132 476.1 387 65.9
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 5.7e-132 474.9 389 67.4
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.8e-128 462.2 327 70.3
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 5.0e-128 461.8 304 74.3
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.9e-127 459.9 318 72.0
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 2.8e-115 419.5 391 57.0
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 4.1e-114 415.6 389 57.8
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 5.4e-114 415.2 385 58.4
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.2e-113 414.1 386 59.3
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 7.8e-113 411.4 391 57.8
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.8e-112 409.1 362 60.5
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 5.6e-111 405.2 422 54.5
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.8e-110 402.9 377 58.1
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 4.7e-110 402.1 388 57.5
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.0e-109 401.0 380 56.1
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.4e-109 400.6 373 58.7
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.8e-109 400.2 392 58.2
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 6.8e-109 398.3 387 55.6
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.4e-108 396.0 393 56.0
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 5.7e-108 395.2 413 52.3
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 5.7e-108 395.2 413 52.3
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 7.5e-108 394.8 389 55.3
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.9e-107 392.9 387 56.8
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 8.3e-107 391.3 356 57.9
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.4e-106 390.6 315 61.9
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 5.9e-105 385.2 275 68.7
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 5.9e-105 385.2 307 60.6
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.3e-104 384.0 307 60.9
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 8.6e-104 381.3 380 55.3
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.5e-103 380.6 318 58.8
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.6e-102 377.1 238 79.0
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.8e-102 376.3 281 65.8
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.4e-101 374.0 305 60.3
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 2.3e-101 373.2 362 55.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 8.9e-101 371.3 301 61.8
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 8.9e-101 371.3 365 53.7
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.0e-100 370.2 305 60.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.0e-100 370.2 301 60.5
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.4e-100 369.4 306 62.1
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 3.4e-100 369.4 412 50.7
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 2.9e-99 366.3 372 52.7
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.6e-97 360.5 372 54.8
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.5e-97 359.4 274 63.9
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.0e-96 357.8 387 52.2
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.3e-96 357.5 275 61.5
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.3e-96 356.7 394 51.3
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 3.9e-96 355.9 248 69.4
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.1e-95 354.4 305 60.0
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.5e-95 353.2 308 59.1
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 9.5e-95 351.3 282 62.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 9.5e-95 351.3 282 62.1
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.8e-93 347.1 300 59.3
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.0e-93 345.9 319 55.8
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.2e-92 344.4 303 58.4
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.2e-92 344.4 305 59.3
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.2e-92 344.4 306 56.9
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 5.8e-92 342.0 385 50.9
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.2e-91 340.1 222 76.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.7e-91 339.3 281 61.6
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 5.4e-90 335.5 387 48.8
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 7.1e-90 335.1 309 57.0
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 7.1e-90 335.1 310 55.2
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 9.2e-90 334.7 302 56.6
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 6.0e-89 332.0 240 67.9
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.3e-88 330.1 328 53.0
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 2.3e-88 330.1 349 50.1
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.0e-88 329.7 276 58.7
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.1e-87 327.8 317 54.3
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.1e-87 327.8 310 55.2
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.1e-87 327.8 310 55.2
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.9e-87 327.0 305 54.8
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 4.3e-87 325.9 302 55.0
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 5.6e-87 325.5 357 49.3
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.6e-86 323.9 316 54.1
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.1e-86 323.6 293 56.7
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 4.7e-86 322.4 371 49.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.1e-85 321.2 280 56.4
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 3.1e-85 319.7 258 60.9
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 2.0e-84 317.0 313 53.0
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 3.4e-84 316.2 313 53.7
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 4.9e-83 312.4 232 69.0
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.1e-82 311.2 388 49.5
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 9.2e-82 308.1 277 57.0
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 8.6e-80 301.6 231 64.1
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.1e-79 301.2 229 63.8
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.3e-79 299.3 296 52.0
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 6.9e-77 292.0 313 49.2
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.8e-75 286.2 288 52.4
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 8.4e-75 285.0 233 60.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 8.4e-75 285.0 239 59.8
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 4.2e-74 282.7 227 62.1
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 7.1e-74 282.0 378 45.0
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 3.9e-72 276.2 353 44.8
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 7.3e-71 271.9 324 46.3
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.6e-70 270.8 213 62.4
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.1e-69 268.1 260 55.8
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 8.4e-67 258.5 253 56.1
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.3e-62 244.6 355 42.3
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 2.1e-62 243.8 220 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 8.1e-62 241.9 303 45.9
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 3.1e-61 240.0 161 68.3
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.5e-60 237.7 303 42.2
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.9e-59 233.4 182 64.8
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.2e-58 229.9 263 48.7
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.5e-58 229.2 317 40.4
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.7e-57 226.9 312 42.9
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 6.7e-56 222.2 302 45.0
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.9e-51 206.8 181 59.7
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 3.8e-51 206.5 160 61.2
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.5e-51 205.7 312 37.8
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.6e-49 201.1 219 51.6
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 2.9e-43 180.3 291 38.5
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.2e-42 176.8 141 63.8
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.8e-40 171.0 200 50.5
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 4.8e-38 162.9 101 72.3
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 7.7e-36 155.6 148 54.7
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 5.1e-32 142.9 117 59.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 1.7e-27 127.9 188 38.8
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 8.2e-22 109.0 102 55.9
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 4.5e-20 103.2 76 65.8
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 6.5e-19 99.4 145 44.1
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 3.6e-17 93.6 147 42.9
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.4e-16 91.7 97 49.5
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 4.8e-14 83.2 89 48.3
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 7.0e-13 79.3 98 49.0
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.3e-11 75.1 67 52.2


User provided reference genes

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