Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 0.0e+00 1180.6 618 100.0
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 0.0e+00 1157.9 612 99.5
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 1.7e-274 949.1 635 78.1
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 5.5e-270 934.1 635 77.3
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 1.4e-265 919.5 634 76.3
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 3.1e-265 918.3 635 75.9
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 5.9e-264 914.1 634 75.9
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 3.2e-262 908.3 635 74.8
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 9.5e-238 827.0 635 68.2
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 7.5e-235 817.4 636 66.7
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 1.4e-233 813.1 634 66.6
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 3.2e-233 812.0 635 65.4
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 9.2e-233 810.4 635 65.2
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 9.2e-233 810.4 635 65.7
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 5.0e-231 804.7 636 65.1
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 4.3e-230 801.6 634 65.3
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 5.6e-230 801.2 635 64.9
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 3.6e-229 798.5 611 67.4
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 5.2e-228 794.7 635 65.0
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 1.7e-226 789.6 631 64.0
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 6.4e-226 787.7 635 63.6
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.4e-225 786.6 635 63.9
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 3.2e-225 785.4 636 65.1
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 1.6e-224 783.1 635 63.6
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.1e-224 782.7 635 63.3
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 2.7e-224 782.3 636 63.8
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 1.0e-223 780.4 668 62.7
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 3.0e-223 778.9 634 63.9
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 3.0e-223 778.9 629 63.4
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 5.1e-223 778.1 635 62.5
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 3.3e-222 775.4 634 64.2
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.6e-221 773.1 634 64.4
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 2.1e-221 772.7 639 62.8
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 2.1e-221 772.7 639 62.8
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 6.2e-221 771.2 636 64.3
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 1.4e-220 770.0 637 63.6
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 1.8e-220 769.6 648 62.8
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 2.4e-220 769.2 635 62.4
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 1.7e-218 763.1 635 61.9
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 2.9e-218 762.3 634 61.8
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 4.9e-218 761.5 635 63.1
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 9.2e-217 757.3 634 61.7
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 1.0e-215 753.8 624 61.9
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.3e-215 753.4 635 62.5
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 2.3e-215 752.7 631 62.3
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 1.1e-214 750.4 647 60.7
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 1.9e-214 749.6 635 62.0
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 3.3e-214 748.8 634 61.4
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 5.6e-214 748.0 635 61.7
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 1.2e-213 746.9 635 60.6
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 1.6e-213 746.5 635 61.7
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 4.7e-213 745.0 634 61.8
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 5.2e-212 741.5 634 61.2
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 2.0e-211 739.6 634 60.6
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 2.6e-211 739.2 635 60.0
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 3.4e-211 738.8 634 60.6
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 9.9e-211 737.3 634 60.3
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.7e-210 736.5 636 61.5
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 7.1e-209 731.1 635 60.6
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.2e-208 730.3 635 59.4
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 6.0e-208 728.0 636 60.2
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 7.8e-208 727.6 615 62.3
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 8.7e-207 724.2 634 60.3
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 4.3e-206 721.8 635 60.5
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 1.6e-205 719.9 635 60.3
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 4.8e-205 718.4 633 58.8
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 4.8e-205 718.4 645 60.5
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 6.2e-205 718.0 635 58.7
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 6.2e-205 718.0 520 71.3
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 8.1e-205 717.6 611 62.4
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 2.4e-204 716.1 667 57.4
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.4e-204 716.1 676 57.5
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 4.0e-204 715.3 634 59.3
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 6.9e-204 714.5 612 61.1
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 1.5e-203 713.4 650 58.8
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 2.6e-203 712.6 635 58.7
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 3.2e-201 705.7 680 56.2
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 3.9e-199 698.7 665 57.1
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 2.5e-198 696.0 684 56.3
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 4.0e-196 688.7 633 57.3
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 4.0e-196 688.7 612 59.0
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 6.9e-196 688.0 637 57.6
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 1.2e-195 687.2 612 59.3
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 7.6e-195 684.5 608 59.9
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 4.9e-194 681.8 606 58.4
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 5.5e-193 678.3 635 57.6
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 7.6e-187 657.9 643 55.8
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 1.8e-180 636.7 639 53.2
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.7e-178 630.2 655 53.6
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 2.8e-173 612.8 408 78.7
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 1.5e-166 590.5 625 53.1
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 1.7e-149 533.9 557 54.6
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 1.3e-146 524.2 633 47.6
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 2.7e-139 500.0 447 63.5
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 1.7e-138 497.3 358 72.6
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 1.4e-132 477.6 660 42.7
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 9.2e-124 448.4 600 44.7
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.8e-120 436.8 407 54.3
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 9.2e-116 421.8 645 37.1
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 2.3e-111 407.1 651 34.7
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 6.6e-98 362.5 414 51.2
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 6.2e-88 329.3 230 73.0
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 5.6e-81 306.2 522 38.1
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 1.6e-80 304.7 325 49.2
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 5.0e-61 240.0 612 30.9
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 1.2e-59 235.3 188 64.4
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 1.2e-54 218.8 262 43.1
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 2.0e-49 201.4 149 73.2
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 2.2e-48 198.0 339 38.9
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.2e-45 188.0 187 51.9
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 1.0e-42 179.1 138 67.4
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 8.8e-42 176.0 124 75.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 3.1e-39 167.5 131 69.5
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 1.9e-36 158.3 134 61.2
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 4.0e-34 150.6 189 45.0
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 1.5e-33 148.7 229 41.0
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 2.8e-32 144.4 195 43.1
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 2.9e-29 134.4 554 24.4
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 2.7e-27 127.9 552 25.2
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 2.8e-19 101.3 137 43.1
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 2.0e-17 95.1 83 62.7
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 1.8e-10 72.0 50 74.0
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 6.8e-10 70.1 56 62.5
TPR.G14991 Trifolium pratense HOM05D001046 ORTHO05D005883 5.8e-09 67.0 124 41.1
Lj5g0008258 Lotus japonicus HOM05D001046 ORTHO05D005883 7.5e-09 66.6 37 81.1


User provided reference genes

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