Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 2.0e-152 542.3 270 100.0
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 1.7e-151 539.3 270 99.3
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 5.1e-95 351.7 281 66.5
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.9e-94 349.7 277 67.5
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 4.1e-92 342.0 279 65.2
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.2e-91 340.5 279 66.3
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 6.5e-90 334.7 277 62.5
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 2.5e-89 332.8 277 62.8
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 5.5e-89 331.6 288 61.8
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 7.1e-89 331.3 276 63.8
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 3.5e-88 328.9 280 61.4
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 4.6e-88 328.6 288 61.8
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 4.6e-88 328.6 280 61.8
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.3e-87 327.0 290 61.4
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 3.0e-87 325.9 274 63.1
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 4.3e-86 322.0 291 60.8
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 5.7e-86 321.6 273 61.2
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 2.4e-84 316.2 280 62.1
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 5.3e-84 315.1 253 64.0
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.2e-83 313.9 276 61.6
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 1.5e-83 313.5 292 57.9
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.0e-83 313.2 292 57.9
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 3.4e-83 312.4 292 57.5
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 5.9e-83 311.6 292 57.5
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.9e-83 311.6 296 57.1
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 7.7e-83 311.2 290 57.6
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.3e-82 310.5 283 58.0
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 2.9e-82 309.3 239 65.7
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 5.0e-82 308.5 285 59.3
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 8.5e-82 307.8 289 57.1
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 3.2e-81 305.8 262 59.9
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 4.2e-81 305.4 270 59.6
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 7.2e-81 304.7 271 57.9
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 9.4e-81 304.3 231 66.2
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 1.6e-80 303.5 233 65.2
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 2.1e-80 303.1 253 62.8
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 3.6e-80 302.4 275 58.5
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 4.6e-80 302.0 272 58.1
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.1e-80 301.6 286 58.4
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.0e-79 300.8 279 59.9
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 1.8e-79 300.1 289 55.0
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 1.8e-79 300.1 261 58.6
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 1.8e-79 300.1 300 54.7
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 3.0e-79 299.3 277 55.6
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 3.0e-79 299.3 228 65.4
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 3.9e-79 298.9 251 62.2
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 5.1e-79 298.5 266 58.6
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 5.1e-79 298.5 277 57.0
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 6.7e-79 298.1 227 67.4
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 6.7e-79 298.1 242 62.8
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 8.8e-79 297.7 285 56.1
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.1e-78 297.4 248 62.1
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 2.0e-78 296.6 266 58.3
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 2.5e-78 296.2 273 59.3
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 3.3e-78 295.8 294 55.1
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 4.3e-78 295.4 237 62.9
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 7.4e-78 294.7 280 57.1
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 9.7e-78 294.3 258 59.3
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.7e-77 293.5 252 60.3
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 1.7e-77 293.5 255 58.8
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 2.2e-77 293.1 262 57.6
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.7e-77 292.4 243 60.1
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 3.7e-77 292.4 250 61.2
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 4.8e-77 292.0 252 59.5
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 4.8e-77 292.0 252 59.5
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.8e-77 292.0 234 60.7
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 4.8e-77 292.0 272 57.4
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 8.2e-77 291.2 271 56.8
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 8.2e-77 291.2 288 54.2
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.4e-76 290.4 296 54.4
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 3.1e-76 289.3 233 60.9
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 3.1e-76 289.3 223 66.8
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 4.1e-76 288.9 236 61.9
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 6.9e-76 288.1 282 55.0
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 1.2e-75 287.3 253 58.9
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 2.0e-75 286.6 251 59.4
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.7e-74 283.5 276 54.0
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.7e-74 283.5 250 59.2
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.2e-74 283.1 276 54.0
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 2.2e-74 283.1 253 59.7
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.2e-74 283.1 227 61.7
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.9e-74 282.7 236 61.4
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 3.8e-74 282.3 268 56.3
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 6.5e-74 281.6 249 56.6
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 8.5e-74 281.2 292 52.1
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 8.5e-74 281.2 255 58.0
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 1.1e-73 280.8 226 61.5
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 1.1e-73 280.8 253 59.3
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.4e-73 280.4 226 61.5
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 1.2e-72 277.3 282 53.2
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 2.3e-71 273.1 276 53.6
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.3e-71 273.1 272 51.8
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 2.0e-70 270.0 225 61.3
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 2.0e-70 270.0 261 55.6
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 3.3e-70 269.2 255 54.5
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 3.3e-70 269.2 282 52.1
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 5.7e-70 268.5 251 54.6
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.7e-70 268.5 224 60.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 9.7e-70 267.7 274 56.2
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.3e-69 265.0 243 57.6
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 2.4e-68 263.1 230 60.4
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 4.1e-68 262.3 235 60.9
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 2.5e-65 253.1 266 51.5
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 1.3e-61 240.7 258 50.0
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 2.2e-61 240.0 240 50.8
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.8e-61 239.6 272 48.5
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.9e-58 229.6 229 51.5
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 7.2e-57 224.9 219 51.1
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 9.4e-57 224.6 229 55.5
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.7e-56 223.0 183 62.8
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 3.4e-54 216.1 183 61.7
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 4.8e-53 212.2 260 48.1
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.1e-52 211.1 164 62.8
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 7.2e-49 198.4 165 60.0
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 2.1e-48 196.8 164 61.0
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 6.8e-47 191.8 235 51.5
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 3.4e-46 189.5 220 46.4
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 1.7e-45 187.2 185 59.5
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.1e-44 184.5 172 57.0
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 2.1e-40 170.2 199 45.2
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.7e-35 153.3 231 45.9
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.5e-33 146.7 199 44.2
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 2.1e-32 143.7 155 52.3
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.1e-31 139.8 195 46.7
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 2.0e-30 137.1 136 53.7
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.4e-28 130.2 91 67.0
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 4.6e-27 125.9 155 49.7
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 1.9e-25 120.6 139 46.8
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.2e-24 117.9 159 45.9
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.7e-16 89.4 62 67.7
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-12 77.8 122 41.8
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 1.4e-12 77.8 119 34.5
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 9.2e-12 75.1 184 33.2
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 1.6e-11 74.3 42 69.0
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 1.0e-10 71.6 79 51.9
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 1.2e-06 58.2 87 36.8


User provided reference genes

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