Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.5e-243 843.6 474 100.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 4.9e-226 787.7 477 94.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-188 662.9 410 93.7
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 5.2e-111 405.6 484 53.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 5.6e-105 385.6 482 51.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.1e-103 381.3 485 50.7
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 2.3e-98 363.6 481 49.7
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.3e-96 357.8 448 57.1
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.1e-95 354.8 483 51.6
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-95 354.4 496 49.8
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.8e-95 354.0 481 52.8
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 9.0e-95 351.7 493 52.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.2e-93 347.1 496 48.8
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.9e-89 334.0 487 49.9
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 5.3e-87 325.9 488 50.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 4.8e-80 302.8 434 50.5
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.7e-72 276.6 496 43.5
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.1e-71 275.0 493 43.8
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.9e-68 264.2 480 45.0
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.2e-68 263.5 507 44.8
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.3e-65 253.1 506 43.3
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.7e-65 252.7 506 43.1
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 5.7e-65 252.7 499 42.9
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 3.7e-64 250.0 505 41.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.8e-64 249.6 501 42.3
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 8.2e-64 248.8 516 41.9
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.9e-63 245.7 506 41.7
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.9e-62 242.7 501 40.7
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 5.9e-62 242.7 504 42.5
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.0e-61 241.9 494 39.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.7e-61 241.1 507 44.4
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.5e-61 239.2 509 41.8
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.9e-60 237.7 509 41.5
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 7.2e-60 235.7 509 44.6
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 7.9e-59 232.3 500 38.4
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-58 231.5 500 38.6
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.4e-58 231.5 519 40.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.3e-58 230.7 504 39.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.1e-57 228.4 490 43.7
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.6e-57 227.3 505 39.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 3.3e-57 226.9 424 40.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.7e-57 226.1 496 39.1
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 9.7e-57 225.3 424 40.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.3e-56 224.9 424 40.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.8e-56 223.8 499 36.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.7e-56 223.4 496 39.9
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.7e-56 223.4 498 37.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 4.8e-56 223.0 502 38.2
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 8.2e-56 222.2 504 38.1
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 8.2e-56 222.2 513 40.7
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 7.0e-55 219.2 493 39.8
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-54 218.4 501 39.7
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.5e-54 218.0 498 40.6
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.6e-54 217.2 509 41.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 3.4e-54 216.9 488 41.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.9e-53 213.8 497 41.2
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.9e-53 213.8 351 46.7
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.0e-53 213.0 509 40.1
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.0e-53 213.0 506 37.5
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 6.5e-53 212.6 503 38.6
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 8.5e-53 212.2 439 41.7
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.9e-52 211.1 425 40.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.2e-52 210.3 456 40.6
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.2e-52 210.3 489 38.9
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.6e-51 206.8 502 39.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.8e-50 204.5 514 35.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.8e-50 204.5 494 38.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 5.2e-50 203.0 507 37.7
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.6e-49 200.7 348 40.8
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 3.3e-49 200.3 501 35.5
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 4.4e-49 199.9 502 35.1
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 9.7e-49 198.7 512 41.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.7e-48 198.0 500 35.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.8e-48 197.2 527 38.1
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 8.2e-48 195.7 479 37.6
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 3.1e-47 193.7 503 34.8
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 4.1e-47 193.4 505 33.7
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.0e-45 188.7 505 34.9
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 6.5e-45 186.0 478 36.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 8.5e-45 185.7 514 34.0
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.5e-44 184.9 507 34.5
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.5e-44 184.9 472 37.3
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 5.5e-44 183.0 504 34.7
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.2e-44 182.6 502 33.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.2e-44 182.6 486 34.2
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.4e-44 182.2 519 37.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.3e-42 177.6 516 36.4
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.0e-42 177.2 492 35.6
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.6e-41 174.1 489 34.8
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 7.5e-41 172.6 501 33.9
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 7.5e-41 172.6 511 33.3
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.7e-40 170.2 496 35.1
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.2e-40 169.1 487 38.2
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 4.1e-39 166.8 378 36.8
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 5.3e-39 166.4 498 32.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.2e-38 165.2 501 33.3
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.2e-38 165.2 499 36.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.0e-38 164.5 504 34.1
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 7.7e-38 162.5 500 34.0
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.3e-37 161.8 497 33.8
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.7e-37 161.4 449 34.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.2e-37 161.0 498 31.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.5e-37 159.1 495 35.4
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.1e-36 158.7 431 37.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.5e-36 157.5 457 33.0
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 3.2e-36 157.1 403 34.2
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 5.5e-36 156.4 478 29.9
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 5.5e-36 156.4 421 36.6
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 9.4e-36 155.6 377 39.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.1e-35 154.5 497 30.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.0e-34 152.1 500 31.2
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.2e-33 148.7 425 32.2
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.1e-31 140.2 439 40.5
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.0e-30 137.9 363 37.2
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.7e-30 137.5 481 29.1
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 7.7e-30 136.0 427 30.2
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.0e-29 135.6 486 32.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.1e-28 132.1 439 34.4
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.5e-28 131.0 408 29.4
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-28 131.0 432 30.3
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 3.3e-28 130.6 437 31.6
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-27 127.9 83 72.3
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.8e-27 127.5 403 32.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.6e-27 127.1 512 29.3
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.6e-27 127.1 513 29.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.8e-26 124.8 407 30.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 5.2e-26 123.2 415 33.7
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 8.9e-26 122.5 397 28.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-25 122.1 423 34.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-25 122.1 398 30.7
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.5e-25 121.7 473 27.9
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.1e-23 115.5 347 34.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.1e-23 114.0 409 32.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 7.0e-23 112.8 136 45.6
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 3.5e-22 110.5 264 40.9
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.8e-22 109.4 73 67.1
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 7.8e-22 109.4 290 33.1
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.8e-21 107.1 326 33.1
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 6.6e-21 106.3 483 27.3
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-20 105.5 379 29.6
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.5e-20 104.4 350 32.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.3e-20 102.8 452 27.7
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.6e-19 101.7 289 36.3
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.8e-19 100.9 412 30.6
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.3e-18 97.8 228 32.9
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 4.4e-17 93.6 210 36.2
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.2e-15 87.4 494 26.7
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-14 85.5 371 28.3
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.7e-14 84.3 328 29.3
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.3e-13 81.3 423 28.4
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.9e-13 80.5 438 28.5
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.1e-12 79.0 371 29.1
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 4.3e-12 77.0 367 30.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.1e-11 74.7 60 65.0
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 8.0e-11 72.8 215 36.3
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.1e-10 70.9 164 36.6
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.0e-10 70.5 79 45.6
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 5.2e-10 70.1 130 42.3
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.8e-10 69.7 284 26.4
Glyma.U031301 Glycine max HOM05D062889 ORTHO05D004532 8.9e-10 69.3 169 35.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.6e-09 67.8 433 28.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.6e-09 67.8 244 28.7
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 3.4e-09 67.4 69 46.4
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 7.5e-09 66.2 46 58.7
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 9.8e-09 65.9 419 24.3
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 4.9e-08 63.5 140 41.4
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 4.9e-08 63.5 234 27.4
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 4.1e-07 60.5 65 46.2
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.6e-06 58.5 243 26.7
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.6e-06 58.5 215 27.0


User provided reference genes

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