Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.6e-195 684.9 382 100.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.0e-193 679.1 382 99.5
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.6e-126 455.7 391 69.1
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 5.0e-112 408.7 389 65.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.6e-108 396.4 387 62.8
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.0e-104 384.4 395 60.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.2e-104 383.3 394 60.7
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.2e-104 383.3 397 65.2
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 6.1e-102 375.2 391 65.5
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.8e-101 373.6 392 60.7
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.7e-99 367.1 396 63.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.2e-93 345.5 411 56.7
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.4e-90 336.7 390 54.6
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 4.5e-89 332.4 399 54.6
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.3e-88 330.1 406 54.7
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 7.2e-87 325.1 416 53.4
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.2e-87 325.1 392 54.6
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.8e-86 323.2 399 54.1
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 2.6e-84 316.6 393 53.4
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.6e-84 316.6 406 51.0
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 9.8e-84 314.7 412 54.6
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 9.8e-84 314.7 391 53.7
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.1e-82 311.2 400 51.5
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.0e-82 308.5 391 54.0
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.0e-82 308.5 398 53.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.0e-81 307.0 388 50.8
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 7.8e-81 305.1 318 60.7
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 7.8e-81 305.1 402 52.0
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.9e-80 302.8 402 50.7
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 8.6e-80 301.6 407 50.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 8.6e-80 301.6 390 52.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.1e-79 301.2 333 58.3
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-79 300.4 405 49.9
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.5e-79 300.1 407 49.4
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-78 296.6 398 50.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.0e-77 294.7 344 53.2
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.4e-77 294.3 394 50.8
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.3e-77 293.5 390 51.3
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 4.0e-77 292.7 399 51.4
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.6e-76 290.0 400 48.8
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 9.8e-76 288.1 402 48.5
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.3e-75 287.7 416 50.7
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-75 287.3 385 50.4
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.7e-75 287.3 422 46.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.7e-75 287.3 403 48.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 3.7e-75 286.2 395 49.6
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.4e-74 283.5 405 51.1
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.6e-73 280.8 422 46.4
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.0e-73 280.4 409 49.9
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.6e-73 279.3 341 52.2
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 6.0e-73 278.9 404 49.5
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.0e-72 278.1 392 49.7
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.0e-72 276.6 413 49.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 8.6e-72 275.0 405 47.7
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.1e-71 274.6 408 48.0
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 7.3e-71 271.9 423 45.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.1e-70 270.4 388 50.8
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.7e-70 269.2 352 52.8
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.7e-70 269.2 402 48.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 4.0e-69 266.2 409 49.6
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.3e-67 261.2 392 49.5
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.9e-67 260.0 337 50.4
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 3.7e-67 259.6 437 46.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 8.3e-67 258.5 329 52.9
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 8.3e-67 258.5 394 48.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.1e-66 258.1 394 47.2
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-66 257.3 337 51.0
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.9e-66 257.3 437 45.8
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.4e-66 256.9 322 52.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.1e-66 256.1 330 53.0
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.1e-66 256.1 404 49.0
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.4e-66 255.8 337 51.0
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 7.1e-66 255.4 396 47.2
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.2e-66 255.0 329 52.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 4.6e-65 252.7 396 46.5
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.6e-65 252.7 401 45.9
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.7e-64 250.8 401 46.9
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.9e-64 249.6 397 47.6
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 8.6e-64 248.4 415 44.1
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.9e-63 247.3 418 45.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.1e-62 243.8 402 47.3
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-61 241.1 307 52.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.4e-61 241.1 382 48.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.4e-61 241.1 402 47.3
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.0e-60 237.3 397 44.8
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 5.8e-60 235.7 343 50.1
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.2e-59 233.8 392 47.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 2.9e-59 233.4 395 47.3
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.1e-58 231.5 311 50.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 5.4e-58 229.2 292 56.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.2e-57 228.0 339 46.9
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.7e-57 226.9 388 45.4
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.3e-56 223.8 266 57.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.0e-56 223.4 398 43.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.5e-55 221.1 411 44.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 3.3e-55 219.9 250 58.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.2e-54 218.0 367 45.5
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.1e-54 217.2 397 43.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.7e-54 216.1 328 47.6
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 8.9e-53 211.8 384 43.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.6e-52 210.3 384 43.2
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.4e-52 209.9 384 43.5
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 4.4e-52 209.5 384 43.5
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.3e-51 208.0 384 43.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.3e-51 208.0 390 48.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.7e-51 207.6 389 44.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.9e-50 204.1 404 43.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 3.2e-50 203.4 381 44.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 3.2e-50 203.4 381 44.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 7.1e-50 202.2 381 43.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.3e-50 201.8 400 40.5
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 9.3e-50 201.8 415 43.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.3e-50 201.8 404 40.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.6e-49 201.1 274 50.4
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 7.8e-49 198.7 319 46.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.7e-48 197.6 318 46.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.7e-48 195.3 271 49.1
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.7e-48 195.3 271 49.1
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.4e-45 187.2 427 38.4
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.3e-40 170.6 224 48.2
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.6e-36 157.1 381 37.5
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.7e-35 154.5 197 48.2
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.4e-34 151.4 394 35.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 8.7e-32 142.1 224 47.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.9e-31 141.0 265 40.8
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 3.1e-29 133.7 366 36.6
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 4.5e-28 129.8 393 34.6
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-27 127.9 200 48.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-27 127.9 200 48.0
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.8e-24 117.9 180 48.9
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-24 117.1 211 43.6
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.5e-23 114.0 95 64.2
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-21 108.2 198 40.4
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.0e-20 104.4 118 55.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.8e-19 100.1 328 33.5
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.1e-17 94.4 290 32.4
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.8e-16 91.3 246 37.0
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-16 90.5 126 45.2
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.7e-15 85.5 199 38.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-14 85.1 199 38.2
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-14 85.1 199 38.2
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.7e-14 83.6 199 37.7
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-13 82.0 199 37.2
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-13 81.6 199 37.7
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.4e-13 81.6 101 56.4
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 4.1e-13 80.1 67 68.7
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 3.6e-09 67.0 228 28.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.5e-07 61.6 137 41.6
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.5e-07 60.8 150 34.7
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 2.5e-07 60.8 70 55.7
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-06 57.8 198 31.8


User provided reference genes

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