Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 1.3e-177 626.3 329 100.0
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 9.7e-173 610.1 329 97.9
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.6e-135 486.5 325 78.5
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.8e-134 483.0 325 78.2
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.6e-130 469.9 325 72.0
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.7e-130 469.2 325 71.4
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 2.4e-123 446.0 317 75.1
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 2.4e-118 429.5 325 71.1
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 3.1e-118 429.1 320 66.2
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 6.8e-118 427.9 321 67.6
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 4.1e-115 418.7 326 70.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.7e-114 416.0 321 69.2
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 7.8e-114 414.5 329 69.6
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 5.1e-113 411.8 323 65.3
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 9.6e-112 407.5 322 67.7
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.6e-111 406.8 330 67.0
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.4e-110 402.9 324 69.4
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 6.9e-110 401.4 321 64.5
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 3.8e-108 395.6 318 63.2
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 4.9e-108 395.2 325 64.6
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 3.5e-106 389.0 325 65.2
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.0e-106 388.3 324 67.6
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 1.5e-101 373.6 326 66.3
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 2.0e-101 373.2 328 60.1
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 2.9e-100 369.4 324 62.3
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 1.4e-99 367.1 327 59.3
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.9e-99 366.7 328 57.6
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 9.3e-99 364.4 325 57.5
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.6e-98 363.6 325 57.5
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 2.1e-98 363.2 322 59.6
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.0e-97 360.9 325 57.2
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 3.9e-97 359.0 322 58.7
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 8.7e-97 357.8 318 61.0
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.1e-96 357.5 325 56.9
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 5.6e-96 355.1 326 55.2
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 9.6e-96 354.4 325 55.7
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.8e-95 352.8 325 56.9
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 2.8e-95 352.8 325 56.3
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 3.7e-95 352.4 326 58.3
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 4.8e-95 352.1 325 55.7
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 8.1e-95 351.3 315 59.0
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.1e-94 350.9 327 56.3
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.1e-94 350.9 319 57.4
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.1e-94 349.4 325 54.8
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.0e-94 349.0 317 56.5
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 6.9e-94 348.2 325 55.1
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 2.6e-93 346.3 315 55.9
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 3.4e-93 345.9 336 53.9
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 5.8e-93 345.1 318 55.3
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 5.8e-93 345.1 326 58.9
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 2.2e-92 343.2 326 58.3
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 4.9e-92 342.0 321 57.6
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 6.4e-92 341.7 326 58.0
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 1.1e-91 340.9 329 53.8
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.2e-91 339.3 311 56.6
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 7.1e-91 338.2 316 57.6
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 1.6e-90 337.0 328 52.4
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.6e-90 337.0 326 54.6
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 2.7e-90 336.3 325 52.9
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 4.6e-90 335.5 342 51.8
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 6.0e-90 335.1 321 54.2
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 7.9e-90 334.7 325 55.4
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 7.9e-90 334.7 319 56.1
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 1.0e-89 334.3 326 54.3
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.8e-89 333.6 325 53.2
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.0e-89 332.8 326 54.0
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 3.3e-88 329.3 294 57.5
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 4.3e-88 328.9 331 52.0
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 7.4e-88 328.2 326 51.5
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 9.6e-88 327.8 323 50.8
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 1.3e-87 327.4 321 52.3
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 4.8e-87 325.5 319 55.8
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 8.2e-87 324.7 314 53.5
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 8.2e-87 324.7 337 54.3
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.1e-86 324.3 322 51.9
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 1.1e-86 324.3 327 51.7
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.4e-86 323.9 320 59.7
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 3.1e-86 322.8 210 73.8
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 4.0e-86 322.4 320 54.1
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 5.3e-86 322.0 376 48.7
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 6.9e-86 321.6 322 52.2
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 6.9e-86 321.6 325 52.3
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 9.0e-86 321.2 320 51.6
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 9.0e-86 321.2 329 53.2
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 1.5e-85 320.5 320 51.6
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 7.6e-85 318.2 317 51.7
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 1.0e-84 317.8 325 50.5
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 3.8e-84 315.8 321 51.4
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 3.8e-84 315.8 291 58.1
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 6.5e-84 315.1 320 50.9
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-83 314.3 320 50.9
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.4e-83 313.9 322 53.4
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.4e-83 313.9 314 58.9
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.9e-83 313.5 325 49.8
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.9e-83 313.5 322 50.6
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 1.9e-83 313.5 325 53.2
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.2e-82 310.8 320 50.3
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.6e-82 310.5 317 53.6
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.6e-82 310.5 315 56.5
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 4.6e-82 308.9 322 53.1
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 1.0e-81 307.8 344 54.7
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.8e-81 307.0 330 50.3
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 3.0e-81 306.2 233 63.9
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 3.0e-81 306.2 323 51.4
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 5.1e-81 305.4 314 51.6
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.1e-80 304.3 277 56.3
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.3e-79 300.8 253 57.7
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.7e-79 299.3 285 55.1
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.4e-78 297.4 327 49.5
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 4.1e-78 295.8 320 48.4
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 1.2e-77 294.3 273 56.0
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 2.6e-77 293.1 250 58.0
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 2.6e-77 293.1 250 58.0
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 3.4e-77 292.7 319 48.3
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 5.9e-77 292.0 250 58.0
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 5.9e-77 292.0 250 58.0
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 3.8e-76 289.3 329 53.8
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 2.7e-74 283.1 369 43.9
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 4.6e-74 282.3 324 47.8
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 3.1e-70 269.6 325 51.4
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.3e-64 249.6 326 43.9
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.0e-61 240.4 322 44.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.4e-59 234.2 335 42.1
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 8.8e-57 224.9 190 56.3
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 1.7e-52 210.7 327 38.8
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 3.8e-52 209.5 227 51.5
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.5e-52 208.4 326 42.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 5.5e-51 205.7 479 32.2
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.2e-50 204.5 231 58.9
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.7e-50 203.4 286 43.4
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 8.0e-50 201.8 212 51.9
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 1.1e-46 191.4 186 53.8
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 5.3e-46 189.1 298 36.6
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 9.1e-46 188.3 298 38.9
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 2.0e-45 187.2 325 38.2
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.0e-44 184.9 313 33.5
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.0e-41 174.9 143 60.1
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 2.2e-39 167.2 267 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 7.0e-38 162.2 319 31.3
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.5e-37 159.5 339 38.1
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.2e-29 134.8 117 60.7
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 8.6e-28 128.6 118 53.4
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-24 116.3 203 35.0
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 5.4e-22 109.4 165 40.0
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.6e-21 107.8 168 51.8
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 5.6e-19 99.4 234 33.8
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.8e-18 97.1 81 58.0
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 9.8e-16 88.6 135 42.2
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 3.0e-12 77.0 256 29.3
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 2.5e-11 73.9 115 47.0
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 5.6e-11 72.8 199 29.1
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.5e-11 72.0 101 38.6
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 4.7e-10 69.7 115 37.4
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 8.9e-09 65.5 172 32.6
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.4e-08 63.2 226 27.9
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 4.9e-07 59.7 117 40.2
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.4e-06 57.4 45 57.8


User provided reference genes

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