Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L37WZG Arachis hypogaea HOM05D006976 ORTHO05D008761 6.4e-57 223.8 107 100.0
EL10Ac4g09265 Beta vulgaris HOM05D006976 ORTHO05D008761 4.6e-31 137.9 69 92.8
FvH4_3g27991 Fragaria vesca HOM05D006976 ORTHO05D008761 1.0e-30 136.7 69 92.8
Lalb_Chr23g0274511 Lupinus albus HOM05D006976 ORTHO05D008761 1.0e-30 136.7 69 94.2
RcHm_v2.0_CPg0502081 Rosa chinensis HOM05D006976 ORTHO05D008761 1.0e-30 136.7 69 92.8
Nn2g14969 Nelumbo nucifera HOM05D006976 ORTHO05D008761 2.3e-30 135.6 69 91.3
QL93p0999_0001 Quercus lobata HOM05D006976 ORTHO05D008761 2.3e-30 135.6 123 61.8
SalBow1G3572 Salvia bowleyana HOM05D006976 ORTHO05D008761 3.0e-30 135.2 69 91.3
Prupe.7G029500 Prunus persica HOM05D006976 ORTHO05D008761 5.1e-30 134.4 69 91.3
PGR111G0047 Punica granatum HOM05D006976 ORTHO05D008761 5.1e-30 134.4 69 91.3
Sed0001172 Sechium edule HOM05D006976 ORTHO05D008761 5.1e-30 134.4 69 89.9
Eucgr.E01114 Eucalyptus grandis HOM05D006976 ORTHO05D008761 6.6e-30 134.0 69 89.9
HanXRQChr01g0020351 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr10g0283561 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr10g0284251 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr10g0289271 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr10g0318191 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr11g0326831 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr15g0497531 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQChr16g0528991 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
HanXRQCPg0580041 Helianthus annuus HOM05D006976 ORTHO05D008761 8.7e-30 133.7 69 89.9
arahy.Tifrunner.gnm1.ann1.Z0BJS7 Arachis hypogaea HOM05D000806 ORTHO05D002324 1.1e-29 133.3 139 57.6
Hund28750 Selenicereus undatus HOM05D006976 ORTHO05D008761 1.5e-29 132.9 69 91.3
Glyma.07G028150 Glycine max HOM05D006976 ORTHO05D008761 1.9e-29 132.5 69 89.9
Potri.013G162300 Populus trichocarpa HOM05D006976 ORTHO05D008761 1.9e-29 132.5 69 89.9
Potri.016G094100 Populus trichocarpa HOM05D006976 ORTHO05D008761 2.5e-29 132.1 69 88.4
PSO548G0011 Papaver somniferum HOM05D006976 ORTHO05D008761 4.3e-29 131.3 69 88.4
CAN.G129.10 Capsicum annuum HOM05D006976 ORTHO05D008761 1.3e-28 129.8 69 87.0
Phvul.002G278108 Phaseolus vulgaris HOM05D006976 ORTHO05D008761 6.2e-28 127.5 69 87.0
AL2G20664 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
ATCG00530 Arabidopsis thaliana HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BcaC03g16543 Brassica carinata HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
A06p23180 Brassica napus HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
C02p43530 Brassica napus HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
C09p40240 Brassica napus HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BolC9t56930H Brassica oleracea HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BolSC29t60590H Brassica oleracea HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BolSC35t60749H Brassica oleracea HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BolSC46t61034H Brassica oleracea HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BolSC47t61096H Brassica oleracea HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BraA06t25422Z Brassica rapa HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
BraSC25t45865Z Brassica rapa HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
CARHR282110 Cardamine hirsuta HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
Thhalv10010976m.g Eutrema salsugineum HOM05D006976 ORTHO05D008761 1.1e-27 126.7 69 84.1
Oeu012774.1 Olea europaea HOM05D006976 ORTHO05D008761 5.3e-27 124.4 69 82.6
GSVIVG01029875001 Vitis vinifera HOM05D006976 ORTHO05D008761 5.3e-27 124.4 69 85.5
Migut.D01165 Erythranthe guttata HOM05D006976 ORTHO05D008761 2.0e-26 122.5 69 81.2
GSVIVG01037398001 Vitis vinifera HOM05D006976 ORTHO05D008761 3.4e-26 121.7 68 83.8
CAN.G232.11 Capsicum annuum HOM05D006976 ORTHO05D008761 9.9e-26 120.2 67 85.1
Lj2P1239T139 Lonicera japonica HOM05D006976 ORTHO05D008761 9.9e-26 120.2 69 81.2
EL10As15g24128 Beta vulgaris HOM05D000806 ORTHO05D002324 1.7e-25 119.4 61 88.5
DCAR_032496 Daucus carota HOM05D006976 ORTHO05D008761 2.2e-25 119.0 69 78.3
HanXRQChr17g0548241 Helianthus annuus HOM05D006976 ORTHO05D008761 4.9e-25 117.9 61 88.5
Glyma.14G104700 Glycine max HOM05D006976 ORTHO05D008761 8.4e-25 117.1 67 85.1
Eucgr.E02607 Eucalyptus grandis HOM05D006976 ORTHO05D008761 1.1e-24 116.7 60 88.3
Eucgr.I02539 Eucalyptus grandis HOM05D006976 ORTHO05D008761 2.4e-24 115.5 67 82.1
Hund29806 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.4e-24 115.5 60 90.0
Hund07993 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.2e-24 114.8 61 86.9
Nn010s41441 Nelumbo nucifera HOM05D006976 ORTHO05D008761 1.6e-23 112.8 58 93.1
MD08G1223200 Malus domestica HOM05D006976 ORTHO05D008761 6.0e-23 110.9 62 83.9
SEGI_11203 Sequoiadendron giganteum HOM05D006976 ORTHO05D008761 6.0e-23 110.9 69 72.5
Gohir.A09G041060 Gossypium hirsutum HOM05D006976 ORTHO05D008761 1.0e-22 110.2 55 90.9
Gorai.012G112700 Gossypium raimondii HOM05D000806 ORTHO05D002324 1.8e-22 109.4 64 78.1
Eucgr.I00197 Eucalyptus grandis HOM05D006976 ORTHO05D008761 2.3e-22 109.0 60 83.3
Gorai.012G094700 Gossypium raimondii HOM05D000806 ORTHO05D002324 5.1e-22 107.8 61 82.0
Gohir.D04G084920 Gossypium hirsutum HOM05D000806 ORTHO05D002324 2.5e-21 105.5 61 82.0
Nn265s45957 Nelumbo nucifera HOM05D006976 ORTHO05D008761 2.5e-21 105.5 54 92.6
Gorai.002G160100 Gossypium raimondii HOM05D006976 ORTHO05D008761 5.3e-19 97.8 53 83.0
HanXRQChr09g0247681 Helianthus annuus HOM05D006976 ORTHO05D008761 9.0e-19 97.1 52 86.5
Lalb_Chr03g0036051 Lupinus albus HOM05D006976 ORTHO05D008761 2.2e-17 92.4 92 53.3
HanXRQChr02g0044891 Helianthus annuus HOM05D006976 ORTHO05D008761 9.3e-16 87.0 46 84.8
Nitab4.5_0007680g0040 Nicotiana tabacum HOM05D006976 ORTHO05D008761 1.6e-15 86.3 46 82.6
HanXRQChr05g0161171 Helianthus annuus HOM05D006976 ORTHO05D008761 3.0e-14 82.0 43 86.0
Nitab4.5_0002181g0030 Nicotiana tabacum HOM05D006976 ORTHO05D008761 3.0e-14 82.0 50 78.0
Gorai.005G146300 Gossypium raimondii HOM05D006976 ORTHO05D008761 2.0e-10 69.3 49 63.3
arahy.Tifrunner.gnm1.ann1.Z0Q6DR Arachis hypogaea HOM05D006976 ORTHO05D008761 7.6e-10 67.4 47 68.1
Gohir.D02G130401 Gossypium hirsutum HOM05D006976 ORTHO05D008761 4.9e-09 64.7 49 59.2
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 4.2e-08 61.6 66 37.9
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 7.1e-08 60.8 66 37.9
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 9.3e-08 60.5 68 30.9
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 2.7e-07 58.9 66 36.4
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.7e-07 58.9 66 33.3
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 3.5e-07 58.5 66 33.3
HPP92_028424 Vanilla planifolia HOM05D006976 ORTHO05D008761 3.5e-07 58.5 35 77.1
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 4.6e-07 58.2 66 33.3
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 6.0e-07 57.8 59 37.3
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 7.9e-07 57.4 66 33.3
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 7.9e-07 57.4 66 31.8
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 1.0e-06 57.0 66 39.4
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 1.0e-06 57.0 59 37.3
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-06 56.6 66 36.4
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 1.3e-06 56.6 66 31.8
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 1.3e-06 56.6 66 34.8
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 1.3e-06 56.6 66 36.4
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 1.8e-06 56.2 66 33.3
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 1.8e-06 56.2 66 33.3
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 2.3e-06 55.8 66 31.8
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 2.3e-06 55.8 66 31.8
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 2.3e-06 55.8 66 34.8
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 3.0e-06 55.5 66 31.8
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 3.0e-06 55.5 66 34.8
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 3.0e-06 55.5 66 34.8
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 3.0e-06 55.5 66 34.8
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 3.0e-06 55.5 59 35.6
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 3.9e-06 55.1 66 31.8
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 3.9e-06 55.1 66 33.3
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 3.9e-06 55.1 61 41.0
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 3.9e-06 55.1 59 37.3
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 5.1e-06 54.7 66 31.8
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 5.1e-06 54.7 66 31.8
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 30.3
AL2G21560 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 6.7e-06 54.3 30 73.3
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 33.3
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 33.3
BraSC25t45849Z Brassica rapa HOM05D006976 ORTHO05D008761 6.7e-06 54.3 32 78.1
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 30.3
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 33.3
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 33.3
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 31.8
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 30.3
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 30.3
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 31.8
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 6.7e-06 54.3 66 33.3
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 8.7e-06 53.9 67 32.8
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 8.7e-06 53.9 66 31.8


User provided reference genes

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