Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 7.4e-83 310.5 153 100.0
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.3e-66 256.5 125 99.2
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 6.3e-66 254.2 125 99.2
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-62 243.4 116 100.0
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 4.2e-54 214.9 123 79.7
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 9.4e-54 213.8 123 80.5
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.6e-53 213.0 123 79.7
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.0e-52 208.8 123 76.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.0e-52 208.4 123 76.4
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 6.8e-52 207.6 123 76.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 6.8e-52 207.6 123 78.0
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.5e-51 206.5 124 72.6
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 7.5e-51 204.1 121 76.9
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 9.8e-51 203.8 123 76.4
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 3.7e-50 201.8 124 72.6
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 7.0e-49 197.6 121 73.6
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.6e-48 196.4 124 71.0
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.0e-47 193.7 121 73.6
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.7e-47 193.0 125 68.0
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.2e-47 192.6 121 72.7
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.1e-46 190.3 121 69.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.5e-46 189.1 144 63.2
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 5.5e-46 188.0 121 70.2
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 9.4e-46 187.2 121 71.1
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 9.4e-46 187.2 121 66.9
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.2e-45 186.8 121 70.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.2e-45 186.8 125 67.2
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.6e-45 186.4 121 71.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.6e-45 185.3 125 66.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 6.1e-45 184.5 121 71.1
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 8.0e-45 184.1 121 66.1
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.3e-44 182.6 121 68.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.0e-44 182.2 125 65.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 4.0e-44 181.8 121 71.1
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 5.2e-44 181.4 121 67.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.2e-43 180.3 121 66.9
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.2e-43 180.3 121 68.6
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-43 180.3 121 67.8
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 2.6e-43 179.1 121 67.8
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.4e-43 178.7 122 66.4
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.4e-43 178.7 121 66.9
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 9.8e-43 177.2 121 66.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.8e-43 177.2 121 65.3
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 9.8e-43 177.2 122 65.6
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 9.8e-43 177.2 121 65.3
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 9.8e-43 177.2 122 65.6
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.3e-42 176.8 121 66.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.3e-42 176.8 121 65.3
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.7e-42 176.4 123 65.9
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.7e-42 176.4 121 66.1
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.7e-42 176.4 121 66.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.7e-42 176.4 121 65.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.7e-42 176.4 121 65.3
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.7e-42 176.4 121 64.5
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.2e-42 176.0 123 65.9
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.2e-42 176.0 121 64.5
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 4.9e-42 174.9 121 65.3
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 4.9e-42 174.9 121 64.5
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.9e-42 174.9 118 68.6
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.9e-42 174.9 118 68.6
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 4.9e-42 174.9 121 66.1
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.9e-42 174.9 121 65.3
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 8.3e-42 174.1 122 65.6
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 8.3e-42 174.1 122 65.6
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 8.3e-42 174.1 122 65.6
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.1e-41 173.7 123 65.0
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.4e-41 173.3 118 67.8
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.4e-41 173.3 121 65.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.4e-41 173.3 121 65.3
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.8e-41 172.9 121 65.3
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.4e-41 172.6 138 59.4
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.1e-41 172.2 117 68.4
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.1e-41 172.2 121 63.6
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 4.1e-41 171.8 120 65.0
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.1e-41 171.8 123 64.2
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 4.1e-41 171.8 120 65.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 4.1e-41 171.8 120 65.0
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 4.1e-41 171.8 123 64.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 7.0e-41 171.0 125 62.4
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 9.2e-41 170.6 125 61.6
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.6e-40 169.9 121 65.3
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.6e-40 169.9 121 64.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.6e-40 169.9 122 64.8
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.0e-40 169.5 125 61.6
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.7e-40 169.1 118 66.9
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 3.5e-40 168.7 111 71.2
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.3e-39 166.8 125 63.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.9e-39 165.6 123 59.3
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 3.8e-39 165.2 125 61.6
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.6e-39 164.5 121 62.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 8.6e-39 164.1 117 67.5
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.5e-38 163.3 121 62.8
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.3e-38 162.2 123 62.6
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 4.3e-38 161.8 121 62.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 4.3e-38 161.8 121 62.8
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.6e-38 161.4 121 62.8
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 7.3e-38 161.0 121 58.7
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 9.5e-38 160.6 123 61.8
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.2e-37 160.2 122 63.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.1e-37 159.5 122 59.8
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 2.8e-37 159.1 125 59.2
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 6.1e-37 157.9 121 61.2
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.8e-36 156.4 121 61.2
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 3.0e-36 155.6 121 57.0
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 5.7e-35 151.4 191 44.0
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.3e-34 150.2 115 60.0
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.1e-33 147.1 124 61.3
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.4e-33 146.0 123 56.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 3.2e-33 145.6 122 56.6
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 7.0e-33 144.4 116 57.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.0e-32 142.9 116 57.8
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 8.6e-31 137.5 125 51.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.9e-30 136.3 203 36.9
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.3e-28 129.4 121 47.9
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.2e-28 128.3 121 47.1
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 2.2e-26 122.9 87 67.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 4.9e-26 121.7 134 48.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 7.0e-25 117.9 123 48.0
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.7e-23 113.2 83 61.4
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.9e-22 109.8 72 70.8
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.8e-21 105.9 85 58.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.8e-21 105.9 72 69.4
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 6.2e-21 104.8 120 41.7
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.8e-20 103.2 121 40.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 4.0e-20 102.1 121 39.7
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 6.8e-20 101.3 75 65.3
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-19 100.5 108 44.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.4e-19 99.0 119 43.7
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-19 98.6 119 43.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 3.7e-18 95.5 123 42.3
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 4.9e-18 95.1 113 38.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-17 93.6 116 42.2
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-16 89.7 101 45.5
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.7e-16 89.4 174 35.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.3e-15 87.0 123 38.2
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.7e-15 86.7 118 40.7
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 3.3e-14 82.4 50 66.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 7.3e-14 81.3 75 54.7
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.2e-09 65.9 89 41.6
arahy.Tifrunner.gnm1.ann1.6DQ84X Arachis hypogaea HOM05D000211 ORTHO05D015768 1.1e-06 57.4 25 92.0
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-06 57.0 68 45.6
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 5.6e-06 55.1 45 51.1
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 5.6e-06 55.1 45 51.1


User provided reference genes

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