Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 1.1e-53 213.0 106 100.0
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 8.0e-52 206.8 108 97.2
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 8.9e-35 150.2 106 78.3
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 2.6e-34 148.7 106 75.5
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 4.4e-34 147.9 106 76.4
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 4.9e-33 144.4 107 71.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.7e-30 136.0 106 68.9
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.6e-28 128.3 104 64.4
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 3.6e-28 128.3 86 75.6
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.7e-28 127.9 104 64.4
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 6.8e-27 124.0 103 62.1
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.4e-26 121.3 92 67.4
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.3e-25 119.8 72 80.6
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 2.9e-25 118.6 104 59.6
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.9e-25 118.6 104 57.7
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 6.4e-25 117.5 100 60.0
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.4e-25 117.5 100 60.0
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.4e-25 117.5 100 60.0
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.9e-24 115.9 114 54.4
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 5.4e-24 114.4 70 80.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 7.0e-24 114.0 100 61.0
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 9.2e-24 113.6 72 77.8
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.2e-24 113.6 68 82.4
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.6e-23 112.8 108 57.4
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.0e-23 112.5 77 67.5
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.5e-23 111.7 105 54.3
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 3.5e-23 111.7 105 56.2
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.0e-23 110.9 95 62.1
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 7.8e-23 110.5 108 54.6
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.3e-22 109.8 68 79.4
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.0e-22 108.6 103 54.4
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.9e-22 108.2 103 54.4
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.9e-22 108.2 103 54.4
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 5.0e-22 107.8 76 67.1
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 8.6e-22 107.1 106 55.7
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 8.6e-22 107.1 96 59.4
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.5e-21 106.3 69 76.8
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 1.9e-21 105.9 81 59.3
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.9e-21 105.9 70 71.4
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 4.3e-21 104.8 89 61.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.6e-21 104.4 96 58.3
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.6e-21 104.4 80 66.2
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.6e-20 102.8 74 66.2
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.6e-20 102.8 81 65.4
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 2.1e-20 102.4 93 57.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.1e-20 102.4 71 67.6
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.6e-20 101.7 106 51.9
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 3.6e-20 101.7 85 58.8
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 3.6e-20 101.7 77 64.9
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 6.2e-20 100.9 76 60.5
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.1e-19 100.1 74 64.9
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 1.1e-19 100.1 79 63.3
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.4e-19 99.8 103 51.5
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.1e-19 98.6 74 59.5
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.0e-19 98.2 69 63.8
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.2e-19 97.8 71 64.8
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 6.8e-19 97.4 81 63.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 8.9e-19 97.1 70 67.1
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.2e-18 96.7 70 67.1
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.5e-18 96.3 71 64.8
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.5e-18 96.3 77 55.8
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.0e-18 95.9 81 55.6
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 3.4e-18 95.1 70 65.7
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 4.4e-18 94.7 76 57.9
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.3e-17 93.2 69 63.8
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.2e-17 92.4 68 61.8
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.9e-17 92.0 73 58.9
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.9e-17 92.0 73 58.9
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 2.9e-17 92.0 72 56.9
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 3.7e-17 91.7 73 54.8
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 4.9e-17 91.3 76 56.6
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 6.4e-17 90.9 76 57.9
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 6.4e-17 90.9 74 56.8
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 8.3e-17 90.5 72 55.6
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 8.3e-17 90.5 87 52.9
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.1e-16 90.1 80 51.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.1e-16 90.1 76 52.6
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.4e-16 89.7 73 57.5
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.4e-16 89.7 76 55.3
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.4e-16 89.7 76 53.9
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.4e-16 89.7 69 62.3
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.9e-16 89.4 76 55.3
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.9e-16 89.4 68 64.7
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.4e-16 89.0 76 55.3
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 2.4e-16 89.0 69 59.4
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.2e-16 88.6 78 57.7
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 3.2e-16 88.6 76 53.9
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 3.2e-16 88.6 71 59.2
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 5.4e-16 87.8 75 49.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 5.4e-16 87.8 68 54.4
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 5.4e-16 87.8 82 45.1
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 7.1e-16 87.4 67 58.2
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.6e-15 86.3 71 52.1
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.6e-15 86.3 71 52.1
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.1e-15 85.9 81 51.9
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 2.7e-15 85.5 69 52.2
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.7e-15 85.5 72 54.2
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 3.5e-15 85.1 70 51.4
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 4.6e-15 84.7 68 51.5
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.6e-15 84.7 67 56.7
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 6.0e-15 84.3 71 52.1
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.3e-14 83.2 70 51.4
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.3e-14 83.2 68 52.9
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.3e-14 83.2 77 54.5
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.7e-14 82.8 83 42.2
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.3e-14 82.4 70 45.7
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 2.3e-14 82.4 74 45.9
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.3e-14 82.4 68 54.4
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 3.0e-14 82.0 82 42.7
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 3.0e-14 82.0 82 42.7
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 5.1e-14 81.3 82 52.4
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 6.6e-14 80.9 76 43.4
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 6.6e-14 80.9 83 42.2
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 8.6e-14 80.5 82 40.2
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 8.6e-14 80.5 83 42.2
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.1e-13 80.1 82 41.5
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.5e-13 79.7 67 55.2
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 8.1e-12 73.9 73 52.1
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 6.8e-11 70.9 65 58.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-10 69.3 55 72.7
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.6e-10 68.9 99 45.5
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 5.8e-10 67.8 61 55.7
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 6.4e-09 64.3 58 56.9
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.1e-08 60.8 68 47.1
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 7.1e-08 60.8 42 71.4
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 9.2e-08 60.5 47 59.6
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.7e-07 58.9 46 63.0
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 3.5e-07 58.5 48 62.5
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.3e-06 56.6 40 65.0
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 1.7e-06 56.2 81 32.1


User provided reference genes

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