Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 7.2e-262 906.7 469 100.0
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 4.8e-250 867.5 471 96.0
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.1e-169 600.5 457 68.7
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 4.6e-168 595.1 420 72.9
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.3e-165 587.0 466 68.5
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.6e-165 586.6 465 69.0
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 6.9e-164 581.3 458 67.7
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 6.0e-160 568.2 452 67.3
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.9e-154 549.3 432 66.4
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 4.6e-152 542.0 469 61.2
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.9e-151 538.9 442 63.6
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-150 537.3 428 67.3
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 4.3e-150 535.4 462 62.3
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 3.7e-149 532.3 424 66.7
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.1e-148 530.8 427 63.9
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.1e-148 530.8 440 62.7
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.5e-147 526.9 484 59.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 4.5e-147 525.4 429 62.9
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 7.7e-147 524.6 433 63.5
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.0e-146 524.2 444 64.6
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.2e-146 523.1 423 64.3
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.9e-146 522.7 424 65.1
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.7e-144 516.2 456 62.1
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 7.9e-144 514.6 476 59.0
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 3.0e-143 512.7 418 63.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 6.7e-143 511.5 466 58.6
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 4.3e-142 508.8 497 56.7
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 5.7e-142 508.4 492 58.5
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 3.7e-141 505.8 446 60.8
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.8e-141 505.4 461 59.0
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.4e-140 503.8 418 64.8
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.5e-139 498.8 461 58.1
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 4.5e-139 498.8 461 58.1
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 4.5e-139 498.8 430 59.8
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.3e-138 497.3 424 60.1
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.7e-138 496.9 453 58.3
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 5.0e-138 495.4 425 62.8
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 4.2e-137 492.3 426 59.9
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 4.2e-137 492.3 425 62.4
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.8e-135 486.9 321 72.6
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.3e-135 486.5 434 61.8
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 3.0e-135 486.1 324 73.8
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 8.8e-135 484.6 427 59.3
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 8.8e-135 484.6 425 60.5
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 8.8e-135 484.6 425 60.7
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.7e-133 480.3 434 60.8
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.8e-133 479.6 427 58.5
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 6.3e-133 478.4 503 55.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.3e-133 478.4 423 58.6
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.4e-132 476.5 426 59.6
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.4e-132 476.5 277 81.2
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 7.0e-132 474.9 494 51.4
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 9.1e-132 474.6 461 56.0
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.2e-131 474.2 454 57.0
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.5e-131 473.8 441 58.3
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 4.5e-131 472.2 434 58.8
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 7.7e-131 471.5 463 54.9
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-130 470.7 434 58.3
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.2e-130 469.9 463 54.4
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.9e-130 469.5 441 57.8
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.8e-130 469.2 421 57.0
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 8.5e-130 468.0 526 52.1
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.4e-129 467.2 525 52.4
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.5e-129 466.5 424 57.8
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.5e-129 466.5 436 56.2
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 4.2e-129 465.7 426 57.5
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 7.2e-129 464.9 473 54.1
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.6e-128 462.6 537 51.0
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.7e-128 462.2 499 49.3
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.9e-127 459.1 452 55.8
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.5e-126 457.2 482 53.9
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.5e-126 457.2 456 54.8
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.6e-126 456.4 468 53.8
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 5.7e-126 455.3 486 52.5
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 9.7e-126 454.5 416 57.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 5.9e-123 445.3 440 54.3
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.7e-122 443.7 472 53.6
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 8.5e-122 441.4 466 51.3
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 5.5e-121 438.7 529 47.6
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 7.2e-121 438.3 494 49.0
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 2.7e-120 436.4 431 55.0
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.1e-120 435.3 428 54.7
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.1e-120 435.3 427 54.8
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.2e-118 431.0 470 52.6
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 3.7e-117 426.0 426 57.3
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.0e-116 421.8 524 47.1
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.4e-111 407.5 276 66.3
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 7.5e-110 401.7 266 69.5
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.1e-108 397.9 424 51.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 5.4e-108 395.6 319 60.8
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 9.1e-108 394.8 425 47.5
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-106 391.0 274 67.9
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 8.6e-106 388.3 269 69.1
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.5e-105 386.7 361 53.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.6e-104 384.0 290 65.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.0e-103 381.3 511 44.8
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 3.4e-102 376.3 267 62.5
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 3.4e-102 376.3 267 63.3
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.5e-99 366.3 290 61.4
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 7.8e-99 365.2 271 64.9
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.3e-98 363.6 270 66.7
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 8.6e-98 361.7 320 55.6
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.6e-96 357.5 539 41.4
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.7e-93 347.4 308 53.9
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 2.9e-93 346.7 237 69.6
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 3.7e-93 346.3 300 53.3
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 5.4e-92 342.4 271 59.4
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.3e-89 333.2 250 62.4
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.2e-86 324.7 303 52.1
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.7e-82 310.8 281 55.5
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 6.6e-82 308.9 195 74.4
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.3e-81 306.6 273 55.7
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.2e-80 304.7 268 54.9
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 6.2e-80 302.4 270 55.6
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.2e-72 275.8 177 72.3
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.7e-69 267.7 191 64.4
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-67 261.5 219 57.1
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.4e-60 238.0 277 47.3
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.8e-55 221.1 276 44.6
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.5e-54 218.0 137 75.2
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 3.4e-54 216.9 280 42.5
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 9.9e-54 215.3 267 51.3
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 6.0e-51 206.1 178 54.5
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 7.9e-51 205.7 220 57.7
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 6.7e-50 202.6 137 65.7
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 2.6e-46 190.7 223 50.7
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.9e-45 187.2 253 41.1
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.1e-44 185.3 137 61.3
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 9.3e-44 182.2 289 37.7
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.1e-39 167.2 152 54.6
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 2.0e-38 164.5 101 72.3
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.5e-38 163.3 293 36.2
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.7e-37 161.4 294 36.4
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 4.6e-27 126.7 284 31.3
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 5.1e-26 123.2 298 29.2
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 4.3e-25 120.2 98 56.1
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.3e-25 120.2 75 76.0
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.4e-25 119.4 122 47.5
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 2.1e-19 101.3 305 30.5
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 2.7e-19 100.9 198 37.9
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 5.3e-15 86.7 213 33.8
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 3.5e-14 84.0 93 46.2
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.7e-13 81.6 52 61.5
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 2.2e-13 81.3 128 53.9
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.2e-11 75.5 62 58.1
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-07 62.4 36 72.2
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.1e-07 60.8 63 46.0
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.5e-06 57.4 104 30.8


User provided reference genes

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