Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 0.0e+00 1238.0 619 100.0
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 0.0e+00 1205.7 619 97.4
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 8.1e-237 823.9 612 69.4
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 1.0e-231 807.0 611 69.4
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 9.5e-230 800.4 621 67.1
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 2.5e-222 775.8 607 66.6
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.7e-218 763.1 614 65.0
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 4.9e-218 761.5 613 65.3
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 4.9e-194 681.8 543 65.2
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 5.9e-179 631.7 614 54.4
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 2.9e-178 629.4 612 55.1
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 2.7e-176 622.9 612 53.8
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 1.8e-172 610.1 620 53.9
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 3.1e-172 609.4 622 53.1
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 5.3e-172 608.6 621 53.3
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 6.5e-170 601.7 644 50.6
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.2e-168 597.4 620 52.9
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 2.1e-168 596.7 618 53.4
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 2.1e-168 596.7 610 52.6
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 8.8e-167 591.3 595 54.8
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 8.8e-167 591.3 604 51.5
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.5e-166 590.5 613 52.4
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 4.4e-166 589.0 616 52.8
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 2.2e-165 586.6 600 52.7
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 5.3e-164 582.0 466 65.0
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.0e-162 577.8 605 51.1
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 6.5e-162 575.1 609 51.9
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 1.1e-161 574.3 595 52.8
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 1.1e-161 574.3 603 51.9
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 3.2e-161 572.8 619 50.9
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 6.1e-160 568.5 598 51.5
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 2.3e-159 566.6 613 49.8
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 4.0e-159 565.8 667 48.0
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 8.8e-159 564.7 592 50.7
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.2e-158 564.3 607 50.1
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 3.3e-158 562.8 630 49.4
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 9.7e-158 561.2 657 48.2
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 1.4e-156 557.4 603 51.6
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 2.4e-156 556.6 592 50.3
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 3.1e-156 556.2 592 50.8
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 3.1e-156 556.2 645 47.4
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 4.1e-156 555.8 605 51.2
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 9.1e-156 554.7 592 51.0
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 1.2e-155 554.3 592 50.5
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 3.5e-155 552.7 605 50.9
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 4.5e-155 552.4 592 50.2
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 4.5e-155 552.4 606 51.0
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 3.8e-154 549.3 592 50.2
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 8.5e-154 548.1 593 49.2
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 1.1e-153 547.7 599 50.3
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 1.9e-153 547.0 620 48.4
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 2.5e-153 546.6 593 49.7
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 2.1e-152 543.5 672 46.3
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 3.4e-150 536.2 612 48.0
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.2e-149 533.5 602 46.8
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 3.7e-149 532.7 632 46.4
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 3.7e-149 532.7 623 47.2
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 1.6e-147 527.3 621 47.3
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 1.0e-146 524.6 600 47.3
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 3.6e-144 516.2 629 46.7
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 6.8e-143 511.9 592 47.5
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 4.9e-141 505.8 553 51.2
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 5.4e-140 502.3 561 49.9
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.3e-138 497.7 559 50.3
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 2.9e-138 496.5 574 48.1
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 3.8e-138 496.1 603 46.1
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 4.7e-136 489.2 626 44.1
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 1.0e-135 488.0 574 47.0
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 1.3e-133 481.1 632 44.1
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 3.5e-131 473.0 626 44.4
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 5.6e-129 465.7 585 45.6
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 2.6e-126 456.8 605 45.3
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 1.1e-116 424.9 613 41.9
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 1.1e-116 424.9 548 44.5
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 4.1e-116 422.9 436 53.7
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 8.1e-112 408.7 552 43.3
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 3.5e-99 366.7 615 37.7
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 4.6e-99 366.3 646 35.9
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 2.8e-96 357.1 400 46.8
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.6e-94 350.5 589 36.3
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 7.6e-94 349.0 298 61.7
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 9.9e-94 348.6 487 41.7
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 6.2e-88 329.3 295 58.6
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 1.3e-85 321.6 403 46.4
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 1.9e-81 307.8 382 45.8
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 7.4e-81 305.8 233 66.1
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 3.7e-80 303.5 483 40.8
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 6.9e-79 299.3 434 44.2
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 2.6e-78 297.4 317 51.1
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 5.7e-65 253.1 305 46.2
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 5.3e-63 246.5 191 66.5
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 5.3e-63 246.5 191 66.5
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 2.1e-59 234.6 484 34.7
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 3.6e-59 233.8 286 47.2
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 9.4e-52 209.1 212 51.9
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 2.0e-46 191.4 259 42.5
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 2.0e-41 174.9 190 52.6
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 3.5e-38 164.1 215 47.0
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 3.6e-35 154.1 178 44.9
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 1.8e-34 151.8 123 56.1
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.2e-33 149.1 203 39.4
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 4.1e-31 140.6 95 68.4
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 5.4e-31 140.2 117 52.1
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 1.0e-26 125.9 101 56.4
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 2.0e-25 121.7 143 49.7
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 4.4e-17 94.0 132 41.7
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 8.0e-11 73.2 147 35.4
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 4.1e-07 60.8 365 21.9
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 7.0e-07 60.1 110 38.2


User provided reference genes

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