Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 8.6e-287 989.6 481 100.0
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.3e-270 934.5 481 96.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 4.5e-259 897.5 484 89.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.4e-257 892.5 484 88.6
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 5.1e-255 884.0 479 88.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.9e-254 882.1 478 88.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 7.6e-251 870.2 484 87.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 8.4e-250 866.7 469 88.7
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.2e-249 864.8 482 85.7
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.1e-245 852.0 476 86.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.4e-228 796.2 479 79.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.0e-226 790.0 472 81.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.0e-226 790.0 472 80.3
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.8e-226 788.1 472 81.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 6.5e-226 787.3 482 78.8
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.1e-225 786.6 473 79.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.4e-225 786.2 483 77.4
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.6e-224 782.7 478 78.7
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.1e-224 780.8 481 77.5
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 8.8e-223 776.9 474 78.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-222 776.5 472 79.9
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 9.7e-222 773.5 469 78.9
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 2.2e-221 772.3 472 79.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.7e-221 771.5 474 77.2
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.4e-220 768.8 468 79.3
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.1e-220 768.1 470 77.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-219 766.5 476 77.5
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.2e-219 766.5 478 77.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.2e-219 766.5 474 77.4
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.6e-219 765.4 471 76.9
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.6e-219 765.4 471 78.1
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.5e-219 765.0 471 77.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.5e-219 765.0 473 77.2
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 5.9e-219 764.2 482 75.3
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.2e-218 762.3 475 76.6
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 8.5e-218 760.4 470 77.9
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.4e-217 759.6 482 77.2
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.5e-217 758.8 479 75.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.7e-216 754.6 476 75.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.7e-216 754.6 471 74.7
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.0e-215 753.4 466 75.8
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.0e-215 753.4 468 79.3
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 9.7e-214 746.9 478 74.3
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.1e-212 743.4 472 75.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.1e-212 741.5 477 73.6
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.0e-210 736.9 417 85.4
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 5.0e-210 734.6 453 77.5
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-209 733.4 470 74.5
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-209 732.3 470 74.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 4.2e-209 731.5 481 73.4
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 5.5e-209 731.1 466 73.8
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 7.2e-209 730.7 473 74.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.6e-208 729.6 477 71.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.1e-208 729.2 458 76.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.3e-207 725.7 471 74.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 8.8e-207 723.8 430 80.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.2e-206 723.4 470 73.4
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 4.4e-206 721.5 478 73.8
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 7.5e-206 720.7 478 73.0
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 7.5e-206 720.7 467 74.5
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.2e-205 719.2 467 74.3
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.2e-205 719.2 467 74.3
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.4e-204 716.5 541 66.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.1e-204 715.3 439 77.4
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.3e-204 714.5 444 76.6
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.2e-202 709.1 469 72.9
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.5e-201 706.4 478 71.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.9e-201 706.1 470 73.4
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.2e-201 705.3 431 78.7
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.2e-201 704.9 471 72.0
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.3e-199 699.1 480 71.5
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 7.5e-198 694.1 470 70.6
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 2.8e-197 692.2 468 69.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 8.3e-197 690.6 367 88.8
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.7e-194 682.9 497 67.4
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-194 682.9 470 71.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.3e-194 682.6 472 72.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.9e-194 682.2 471 72.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.9e-194 682.2 471 70.5
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-193 679.9 413 77.2
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.9e-193 679.5 471 72.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.6e-192 676.4 426 75.6
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.1e-192 676.0 472 70.8
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.8e-192 675.6 472 71.6
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.6e-192 675.2 470 69.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.0e-191 673.7 471 71.8
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.3e-191 672.5 471 71.8
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.3e-191 672.5 469 72.5
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 3.0e-191 672.2 472 71.6
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.0e-191 671.8 473 68.9
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.8e-191 671.0 472 71.0
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 8.9e-191 670.6 471 71.3
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.2e-190 670.2 466 69.3
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.6e-190 669.1 475 70.9
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.6e-190 669.1 471 71.5
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.7e-189 666.4 472 71.0
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.1e-188 662.1 471 70.9
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 3.1e-188 662.1 471 71.1
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.1e-188 662.1 471 70.9
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 9.2e-188 660.6 515 62.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.0e-186 657.1 484 68.0
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.0e-186 657.1 472 68.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.9e-186 655.6 471 70.5
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 8.6e-186 654.1 471 67.1
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.8e-183 644.4 527 63.9
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 7.3e-177 624.4 443 70.7
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.7e-173 613.2 487 62.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.2e-172 609.0 478 66.9
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 7.8e-171 604.4 469 65.0
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-167 594.0 350 79.4
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-164 583.9 363 77.7
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.5e-163 578.9 407 70.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.7e-162 576.6 513 57.1
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 9.9e-158 560.8 488 57.8
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.8e-157 558.9 465 63.0
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 8.4e-157 557.8 472 59.7
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.2e-152 541.6 481 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.7e-139 499.6 469 53.7
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.2e-133 479.9 549 46.4
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.0e-125 454.5 470 53.6
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-117 427.2 329 69.3
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 6.5e-117 425.2 269 74.0
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 5.5e-116 422.2 306 68.0
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 6.5e-109 398.7 228 83.8
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 9.7e-97 358.2 479 43.6
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.8e-96 355.9 287 68.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 6.3e-88 328.9 382 44.8
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.8e-85 319.7 203 72.9
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.8e-82 310.8 272 59.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.9e-80 302.8 486 36.4
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.7e-78 295.4 248 64.1
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.4e-74 284.6 510 37.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.7e-73 279.3 272 52.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.1e-68 265.0 473 38.1
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.1e-63 248.4 455 36.7
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-57 228.0 174 66.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 6.4e-56 222.6 207 54.1
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.9e-55 221.1 180 61.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.5e-54 216.9 332 41.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 7.3e-52 209.1 198 53.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.6e-49 200.7 111 79.3
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.9e-48 197.2 111 77.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-47 195.3 111 76.6
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 3.5e-46 190.3 202 53.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 6.0e-46 189.5 118 83.1
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.1e-42 178.7 107 77.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.2e-41 175.3 122 68.0
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.4e-39 166.4 111 67.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.3e-37 161.8 320 34.1
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.6e-35 153.7 122 59.0
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 5.3e-34 149.8 109 65.1
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.2e-33 148.7 77 90.9
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.1e-31 142.1 116 59.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.5e-28 131.0 67 91.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 2.7e-22 110.9 125 52.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.2e-17 95.5 58 77.6
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-11 75.5 90 47.8
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 7.6e-09 66.2 39 79.5
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.9e-08 64.3 35 82.9
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.9e-07 61.6 40 75.0
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 9.3e-07 59.3 33 87.9


User provided reference genes

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