Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KZ2IY9 Arachis hypogaea HOM05D006158 ORTHO05D007065 1.1e-69 266.5 138 100.0
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 9.8e-34 147.1 137 65.0
arahy.Tifrunner.gnm1.ann1.JGW43E Arachis hypogaea HOM05D000306 ORTHO05D005993 3.5e-23 112.1 55 96.4
arahy.Tifrunner.gnm1.ann1.HK2K9G Arachis hypogaea HOM05D006158 ORTHO05D007065 1.0e-14 84.0 117 49.6
arahy.Tifrunner.gnm1.ann1.EEM62Q Arachis hypogaea HOM05D002203 ORTHO05D007065 4.3e-13 78.6 51 80.4
FAN15G1568 Fragaria x ananassa HOM05D006158 ORTHO05D007065 1.3e-09 67.0 77 50.6
arahy.Tifrunner.gnm1.ann1.XF6DSS Arachis hypogaea HOM05D006158 ORTHO05D007065 2.2e-09 66.2 63 63.5
FvH4_2g09040 Fragaria vesca HOM05D006158 ORTHO05D007065 2.9e-09 65.9 77 49.4
arahy.Tifrunner.gnm1.ann1.VMSS78 Arachis hypogaea HOM05D006158 ORTHO05D007065 3.7e-09 65.5 54 68.5
arahy.Tifrunner.gnm1.ann1.VZ83MM Arachis hypogaea HOM05D006158 ORTHO05D007065 3.7e-09 65.5 54 68.5
FAN27G0970 Fragaria x ananassa HOM05D006158 ORTHO05D007065 3.7e-09 65.5 77 49.4
Peaxi162Scf00684g00228 Petunia axillaris HOM05D006158 ORTHO05D007065 1.4e-08 63.5 58 60.3
Lj1g0002606 Lotus japonicus HOM05D006158 ORTHO05D007065 1.9e-08 63.2 58 62.1
Os02g0705400 Oryza sativa ssp. japonica HOM05D006158 ORTHO05D007065 1.9e-08 63.2 62 56.5
Sabra09G0090100 Salix brachista HOM05D006158 ORTHO05D007065 1.9e-08 63.2 68 50.0
Gorai.012G155300 Gossypium raimondii HOM05D006158 ORTHO05D007065 2.4e-08 62.8 58 55.2
vmacro02093 Vaccinium macrocarpon HOM05D006158 ORTHO05D007065 2.4e-08 62.8 62 54.8
Medtr3g116830 Medicago truncatula HOM05D006158 ORTHO05D007065 3.2e-08 62.4 59 61.0
Nitab4.5_0000336g0020 Nicotiana tabacum HOM05D006158 ORTHO05D007065 3.2e-08 62.4 73 46.6
HanXRQChr12g0376151 Helianthus annuus HOM05D006158 ORTHO05D007065 4.1e-08 62.0 67 49.3
MBI16_g07736_MAGBIO Magnolia biondii HOM05D006158 ORTHO05D007065 4.1e-08 62.0 50 64.0
Sc18g0004420 Simmondsia chinensis HOM05D006158 ORTHO05D007065 4.1e-08 62.0 59 52.5
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 5.4e-08 61.6 121 38.0
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 5.4e-08 61.6 121 38.0
Gohir.A04G127801 Gossypium hirsutum HOM05D006158 ORTHO05D007065 5.4e-08 61.6 58 53.4
Gohir.D04G167000 Gossypium hirsutum HOM05D006158 ORTHO05D007065 5.4e-08 61.6 58 53.4
RcHm_v2.0_Chr6g0264711 Rosa chinensis HOM05D006158 ORTHO05D007065 5.4e-08 61.6 67 52.2
Dinv42054 Davidia involucrata HOM05D006158 ORTHO05D007065 7.1e-08 61.2 80 47.5
HanXRQChr09g0248171 Helianthus annuus HOM05D006158 ORTHO05D007065 7.1e-08 61.2 78 46.2
Rhsim11G0178600 Rhododendron simsii HOM05D006158 ORTHO05D007065 7.1e-08 61.2 73 47.9
SalBow6G0500 Salvia bowleyana HOM05D006158 ORTHO05D007065 7.1e-08 61.2 40 75.0
EL10Ac9g21712 Beta vulgaris HOM05D006158 ORTHO05D007065 9.2e-08 60.8 73 45.2
Cpa.g.sc62.161 Carica papaya HOM05D006158 ORTHO05D007065 9.2e-08 60.8 48 64.6
Haze_02402 Corylus avellana HOM05D006158 ORTHO05D007065 9.2e-08 60.8 77 42.9
DCAR_001571 Daucus carota HOM05D006158 ORTHO05D007065 9.2e-08 60.8 99 37.4
Thecc.02G083700 Theobroma cacao HOM05D006158 ORTHO05D007065 9.2e-08 60.8 48 66.7
EL10Ac9g20870 Beta vulgaris HOM05D006158 ORTHO05D007065 1.2e-07 60.5 39 71.8
DCAR_028978 Daucus carota HOM05D006158 ORTHO05D007065 1.2e-07 60.5 78 48.7
Glyma.04G012400 Glycine max HOM05D006158 ORTHO05D007065 1.2e-07 60.5 54 61.1
Lalb_Chr23g0265361 Lupinus albus HOM05D006158 ORTHO05D007065 1.2e-07 60.5 54 59.3
Hund06240 Selenicereus undatus HOM05D006158 ORTHO05D007065 1.2e-07 60.5 54 55.6
GSVIVG01023785001 Vitis vinifera HOM05D006158 ORTHO05D007065 1.2e-07 60.5 67 49.3
Ah.01g019280 Amaranthus hybridus HOM05D006158 ORTHO05D007065 1.6e-07 60.1 54 53.7
Sabra04G0104200 Salix brachista HOM05D006158 ORTHO05D007065 1.6e-07 60.1 63 54.0
HPP92_008313 Vanilla planifolia HOM05D006158 ORTHO05D007065 1.6e-07 60.1 62 53.2
Cfa004987 Carpinus fangiana HOM05D006158 ORTHO05D007065 2.1e-07 59.7 58 53.4
MELO3C023300.2 Cucumis melo HOM05D006158 ORTHO05D007065 2.1e-07 59.7 68 51.5
CsaV3_2G014760 Cucumis sativus L. HOM05D006158 ORTHO05D007065 2.1e-07 59.7 68 51.5
PGR042G1835 Punica granatum HOM05D006158 ORTHO05D007065 2.1e-07 59.7 68 50.0
CSS0017185 Camellia sinensis var. sinensis HOM05D006158 ORTHO05D007065 2.7e-07 59.3 67 46.3
CSS0043812 Camellia sinensis var. sinensis HOM05D006158 ORTHO05D007065 2.7e-07 59.3 90 40.0
Carub.0004s0065 Capsella rubella HOM05D006158 ORTHO05D007065 2.7e-07 59.3 63 47.6
CiPaw.05G065900 Carya illinoinensis HOM05D006158 ORTHO05D007065 2.7e-07 59.3 48 64.6
ClCG11G004360 Citrullus lanatus HOM05D006158 ORTHO05D007065 2.7e-07 59.3 68 50.0
Lj9A374T110 Lonicera japonica HOM05D006158 ORTHO05D007065 2.7e-07 59.3 58 51.7
Sed0010470 Sechium edule HOM05D006158 ORTHO05D007065 2.7e-07 59.3 67 52.2
AL4G10820 Arabidopsis lyrata HOM05D006158 ORTHO05D007065 3.5e-07 58.9 48 60.4
AT2G21620 Arabidopsis thaliana HOM05D006158 ORTHO05D007065 3.5e-07 58.9 63 47.6
BcaB08g34988 Brassica carinata HOM05D006158 ORTHO05D007065 3.5e-07 58.9 63 47.6
BcaC07g41131 Brassica carinata HOM05D006158 ORTHO05D007065 3.5e-07 58.9 63 47.6
A09p58080 Brassica napus HOM05D001159 ORTHO05D001712 3.5e-07 58.9 63 47.6
C08p41330 Brassica napus HOM05D001159 ORTHO05D001712 3.5e-07 58.9 63 47.6
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 3.5e-07 58.9 63 47.6
BraA09t41196Z Brassica rapa HOM05D001159 ORTHO05D001712 3.5e-07 58.9 63 47.6
Duzib052G0490 Durio zibethinus HOM05D006158 ORTHO05D007065 3.5e-07 58.9 48 62.5
Eucgr.G01684 Eucalyptus grandis HOM05D006158 ORTHO05D007065 3.5e-07 58.9 48 64.6
Gohir.A12G029500 Gossypium hirsutum HOM05D006158 ORTHO05D007065 3.5e-07 58.9 54 55.6
Gorai.008G029500 Gossypium raimondii HOM05D006158 ORTHO05D007065 3.5e-07 58.9 54 55.6
Lsat_1_v5_gn_5_119101 Lactuca sativa HOM05D006158 ORTHO05D007065 3.5e-07 58.9 67 49.3
Potri.004G156200 Populus trichocarpa HOM05D006158 ORTHO05D007065 3.5e-07 58.9 59 54.2
Solyc01g109710.3 Solanum lycopersicum HOM05D006158 ORTHO05D007065 3.5e-07 58.9 47 63.8
Sopen01g051900 Solanum pennellii HOM05D006158 ORTHO05D007065 3.5e-07 58.9 47 63.8
HPP92_004901 Vanilla planifolia HOM05D006158 ORTHO05D007065 3.5e-07 58.9 47 66.0
Aa31LG7G14860 Aethionema arabicum HOM05D006158 ORTHO05D007065 4.6e-07 58.5 48 60.4
CARHR112610 Cardamine hirsuta HOM05D006158 ORTHO05D007065 4.6e-07 58.5 63 47.6
Migut.B00227 Erythranthe guttata HOM05D006158 ORTHO05D007065 4.6e-07 58.5 68 51.5
Phvul.009G023400 Phaseolus vulgaris HOM05D006158 ORTHO05D007065 4.6e-07 58.5 54 55.6
Potri.004G156100 Populus trichocarpa HOM05D006158 ORTHO05D007065 4.6e-07 58.5 53 58.5
PGSC0003DMG400000731 Solanum tuberosum HOM05D006158 ORTHO05D007065 4.6e-07 58.5 39 71.8
VMungo1309G1281 Vigna mungo HOM05D006158 ORTHO05D007065 4.6e-07 58.5 39 74.4
Zm00001eb252090 Zea mays HOM05D006158 ORTHO05D007065 4.6e-07 58.5 52 59.6
CAN.G1412.17 Capsicum annuum HOM05D006158 ORTHO05D007065 6.0e-07 58.2 47 63.8
AUR62011306 Chenopodium quinoa HOM05D006158 ORTHO05D007065 6.0e-07 58.2 61 49.2
Duzib132G0028 Durio zibethinus HOM05D006158 ORTHO05D007065 6.0e-07 58.2 48 62.5
Oeu020748.1 Olea europaea HOM05D006158 ORTHO05D007065 6.0e-07 58.2 53 58.5
TPR.G38099 Trifolium pratense HOM05D006158 ORTHO05D007065 6.0e-07 58.2 54 59.3
AUR62016751 Chenopodium quinoa HOM05D006158 ORTHO05D007065 7.8e-07 57.8 54 53.7
ECA234G4498 Erigeron canadensis HOM05D006158 ORTHO05D007065 7.8e-07 57.8 62 51.6
Sp4g00780 Schrenkiella parvula HOM05D006158 ORTHO05D007065 7.8e-07 57.8 63 46.0
ECA240G2632 Erigeron canadensis HOM05D006158 ORTHO05D007065 1.0e-06 57.4 63 47.6
Oeu029148.1 Olea europaea HOM05D006158 ORTHO05D007065 1.0e-06 57.4 44 63.6
Potri.009G117500 Populus trichocarpa HOM05D006158 ORTHO05D007065 1.0e-06 57.4 68 47.1
TAR381G1268 Trochodendron aralioides HOM05D006158 ORTHO05D007065 1.0e-06 57.4 62 48.4
Cc02_g17430 Coffea canephora HOM05D006158 ORTHO05D007065 1.3e-06 57.0 54 55.6
Psat5g004200 Pisum sativum HOM05D006158 ORTHO05D007065 1.3e-06 57.0 73 50.7
Gohir.D12G028800 Gossypium hirsutum HOM05D006158 ORTHO05D007065 1.7e-06 56.6 54 53.7
Manes.11G086500 Manihot esculenta HOM05D006158 ORTHO05D007065 1.7e-06 56.6 54 53.7
Prupe.8G095600 Prunus persica HOM05D006158 ORTHO05D007065 1.7e-06 56.6 62 48.4
Aqoxy5G01600 Aquilegia oxysepala HOM05D006158 ORTHO05D007065 2.3e-06 56.2 48 56.2
CiPaw.06G134600 Carya illinoinensis HOM05D006158 ORTHO05D007065 2.3e-06 56.2 48 60.4
COL.COLO4_25946 Corchorus olitorius HOM05D006158 ORTHO05D007065 2.3e-06 56.2 54 51.9
Thhalv10000338m.g Eutrema salsugineum HOM05D006158 ORTHO05D007065 2.3e-06 56.2 63 44.4
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 2.3e-06 56.2 121 34.7
Nn5g29641 Nelumbo nucifera HOM05D006158 ORTHO05D007065 2.3e-06 56.2 50 60.0
Ciclev10029371m.g Citrus clementina HOM05D006158 ORTHO05D007065 3.0e-06 55.8 54 55.6
PSO675G7009 Papaver somniferum HOM05D006158 ORTHO05D007065 3.0e-06 55.8 45 62.2
SGA_v2.0_scaffold32G13170 Striga asiatica HOM05D006158 ORTHO05D007065 3.0e-06 55.8 66 48.5
THA.LOC104824819 Tarenaya hassleriana HOM05D006158 ORTHO05D007065 3.0e-06 55.8 48 58.3
Atru.chr5.3034 Acer truncatum HOM05D006158 ORTHO05D007065 3.9e-06 55.5 77 44.2
MSTRG.20075 Avicennia marina HOM05D006158 ORTHO05D007065 3.9e-06 55.5 66 47.0
MD05G1064900 Malus domestica HOM05D006158 ORTHO05D007065 3.9e-06 55.5 62 48.4
MD10G1073900 Malus domestica HOM05D006158 ORTHO05D007065 3.9e-06 55.5 53 54.7
Ca_15362_v3 Cicer arietinum L. HOM05D006158 ORTHO05D007065 5.1e-06 55.1 38 68.4
Hma1.2p1_2192F.1_g316750 Hydrangea macrophylla HOM05D006158 ORTHO05D007065 5.1e-06 55.1 62 46.8
Hma1.2p1_2496F.1_g323328 Hydrangea macrophylla HOM05D006158 ORTHO05D007065 5.1e-06 55.1 62 46.8
MD05G1065000 Malus domestica HOM05D006158 ORTHO05D007065 5.1e-06 55.1 61 49.2
Hund00258 Selenicereus undatus HOM05D006158 ORTHO05D007065 5.1e-06 55.1 40 65.0
CDE05G2374 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 8.6e-06 54.3 59 47.5


User provided reference genes

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