Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 2.7e-71 271.9 140 100.0
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 4.0e-51 204.9 140 80.7
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 2.8e-44 182.2 144 72.2
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 3.1e-43 178.7 145 71.0
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 4.4e-42 174.9 136 69.1
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 6.4e-41 171.0 142 68.3
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.9e-40 169.5 136 69.1
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.9e-40 169.5 136 66.9
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.6e-39 166.4 140 66.4
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 3.5e-39 165.2 137 66.4
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 4.6e-39 164.9 147 64.6
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 4.6e-39 164.9 147 64.6
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.0e-38 163.7 138 65.9
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 3.9e-38 161.8 136 65.4
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 5.1e-38 161.4 127 70.9
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 6.6e-38 161.0 138 63.8
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 6.6e-38 161.0 138 63.8
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 6.6e-38 161.0 138 63.8
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 2.5e-37 159.1 139 65.5
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 3.3e-37 158.7 134 64.9
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 3.3e-37 158.7 136 64.0
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 4.3e-37 158.3 135 63.7
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 4.3e-37 158.3 136 64.7
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 4.3e-37 158.3 139 61.2
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 5.6e-37 157.9 139 62.6
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 5.6e-37 157.9 139 62.6
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 9.6e-37 157.1 139 64.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 9.6e-37 157.1 131 66.4
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.3e-36 156.8 135 64.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.3e-36 156.8 136 63.2
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.3e-36 156.8 137 65.0
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.6e-36 156.4 137 64.2
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.8e-36 155.6 137 65.0
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.8e-36 155.6 129 65.1
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 3.6e-36 155.2 129 65.9
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 3.6e-36 155.2 139 64.0
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 4.8e-36 154.8 139 61.9
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 6.2e-36 154.5 135 64.4
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 6.2e-36 154.5 138 64.5
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-35 153.7 132 64.4
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.4e-35 153.3 139 63.3
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.8e-35 152.9 139 61.2
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.4e-35 152.5 129 64.3
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 2.4e-35 152.5 138 62.3
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 9.0e-35 150.6 134 62.7
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.2e-34 150.2 129 64.3
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.5e-34 149.8 137 61.3
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.0e-34 149.4 137 61.3
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.0e-34 149.4 129 63.6
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.0e-34 149.4 132 62.9
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 2.6e-34 149.1 138 63.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 3.4e-34 148.7 129 65.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 9.9e-34 147.1 126 65.1
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.7e-33 146.4 133 62.4
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.9e-33 145.6 129 63.6
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 3.8e-33 145.2 129 66.7
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 3.8e-33 145.2 134 62.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 6.4e-33 144.4 129 62.8
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 8.4e-33 144.1 129 62.8
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 8.4e-33 144.1 129 63.6
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.1e-32 143.7 127 61.4
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 2.4e-32 142.5 138 60.9
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.2e-32 142.1 127 64.6
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.2e-32 142.1 132 62.1
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 4.2e-32 141.7 134 61.9
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 5.4e-32 141.4 134 60.4
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 7.1e-32 141.0 134 60.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 9.3e-32 140.6 129 61.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.2e-31 140.2 140 59.3
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.6e-31 139.8 134 61.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 6.0e-31 137.9 137 56.9
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 7.9e-31 137.5 129 61.2
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.0e-30 137.1 127 61.4
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.3e-30 136.7 127 62.2
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.3e-30 136.7 129 61.2
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.3e-30 136.7 161 53.4
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.8e-30 136.3 137 59.9
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.3e-30 136.0 134 57.5
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.1e-30 134.8 135 59.3
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 6.7e-30 134.4 129 60.5
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.1e-29 133.7 129 61.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 3.3e-29 132.1 139 57.6
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 4.3e-29 131.7 140 56.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.1e-27 127.1 130 58.5
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 6.9e-27 124.4 132 53.8
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 9.0e-27 124.0 129 55.8
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.2e-26 123.6 140 53.6
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.2e-26 123.6 131 55.7
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.5e-26 123.2 187 45.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 7.6e-26 120.9 131 55.0
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.3e-25 120.2 134 56.0
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.1e-24 117.1 132 51.5
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.4e-24 115.9 132 50.8
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.5e-24 114.8 132 50.0
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 1.6e-23 113.2 142 52.1
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 4.6e-23 111.7 113 60.2
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 4.6e-23 111.7 102 60.8
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 6.0e-23 111.3 134 47.8
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.3e-22 110.2 129 51.2
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.8e-22 109.8 128 52.3
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.8e-22 109.8 113 59.3
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.8e-22 109.8 160 43.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 8.7e-22 107.5 121 53.7
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.5e-21 106.7 129 51.9
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.9e-21 106.3 119 48.7
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.9e-21 106.3 132 50.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 2.5e-21 105.9 131 48.9
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.8e-19 99.8 57 86.0
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 2.4e-19 99.4 134 46.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.5e-18 96.7 103 52.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 7.6e-18 94.4 101 51.5
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.3e-17 93.6 141 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.2e-17 92.8 142 44.4
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.9e-17 92.4 181 37.6
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 3.8e-17 92.0 53 81.1
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 3.8e-17 92.0 141 43.3
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 8.4e-17 90.9 141 43.3
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.4e-16 90.1 53 81.1
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.5e-16 89.4 98 50.0
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 4.2e-16 88.6 125 44.8
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 4.6e-15 85.1 57 68.4
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 4.6e-15 85.1 116 48.3
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 6.0e-15 84.7 98 50.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-12 75.5 83 53.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.0e-10 69.7 48 68.8
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.2e-09 66.2 119 40.3
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.9e-09 65.9 44 70.5
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.9e-08 63.2 62 54.8
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.3e-06 56.2 85 49.4
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-06 54.7 55 58.2


User provided reference genes

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