Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 5.2e-121 438.0 258 100.0
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 1.2e-112 410.2 258 87.2
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 1.7e-108 396.4 258 85.7
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 3.7e-87 325.5 254 71.3
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 9.2e-86 320.9 260 75.4
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 1.0e-84 317.4 256 72.7
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 9.6e-83 310.8 257 73.5
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.6e-82 310.1 255 68.6
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.1e-81 307.4 256 66.8
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 2.4e-78 296.2 267 64.8
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 1.2e-77 293.9 254 66.9
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 3.9e-76 288.9 255 65.9
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 1.3e-68 263.8 224 66.1
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 5.6e-67 258.5 254 58.7
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 1.8e-65 253.4 254 57.9
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 7.6e-64 248.1 244 57.4
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 7.6e-64 248.1 248 65.3
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.9e-62 243.4 250 60.8
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 2.4e-62 243.0 243 58.4
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 7.1e-62 241.5 249 57.0
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.1e-61 240.0 252 56.7
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 3.5e-61 239.2 256 54.7
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 7.9e-61 238.0 253 55.7
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 1.8e-60 236.9 265 57.4
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 2.3e-60 236.5 254 54.3
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 3.9e-60 235.7 256 53.9
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 5.1e-60 235.3 247 57.5
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 5.1e-60 235.3 253 54.9
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 5.1e-60 235.3 267 58.8
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 6.7e-60 235.0 267 58.4
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.5e-59 233.8 267 58.8
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.5e-59 233.8 252 54.4
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.5e-59 233.8 266 53.0
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 2.5e-59 233.0 245 54.3
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 2.5e-59 233.0 245 54.7
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 3.7e-58 229.2 250 59.2
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.8e-57 226.9 266 51.1
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 2.4e-57 226.5 228 60.5
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.1e-57 226.1 247 55.1
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 4.0e-57 225.7 266 51.1
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 6.9e-57 224.9 248 55.2
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 6.9e-57 224.9 235 55.7
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.0e-56 223.4 229 55.9
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.4e-56 222.6 235 55.3
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 3.4e-56 222.6 303 50.5
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.3e-55 220.7 229 56.3
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 2.2e-55 219.9 256 52.7
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 3.8e-55 219.2 320 50.0
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 6.5e-55 218.4 325 44.9
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 6.5e-55 218.4 249 53.8
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 6.5e-55 218.4 250 52.8
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 1.4e-54 217.2 261 51.0
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 1.9e-54 216.9 219 61.6
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 2.5e-54 216.5 239 57.7
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 4.2e-54 215.7 246 62.2
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 4.2e-54 215.7 304 46.7
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 5.5e-54 215.3 251 58.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 5.5e-54 215.3 252 51.6
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 9.3e-54 214.5 250 52.0
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 1.2e-53 214.2 261 51.0
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.3e-52 210.7 231 53.2
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.9e-51 206.8 193 63.7
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 3.3e-51 206.1 244 58.6
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 7.4e-51 204.9 233 51.9
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.3e-50 204.1 257 49.4
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.6e-50 203.8 237 58.6
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 2.1e-50 203.4 251 57.8
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.8e-50 203.0 252 52.0
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 3.7e-50 202.6 250 48.8
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 8.2e-50 201.4 222 55.0
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 8.2e-50 201.4 251 57.8
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.8e-49 200.3 224 55.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 2.4e-49 199.9 224 52.2
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 1.3e-47 194.1 255 55.7
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.3e-47 194.1 225 49.3
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 2.9e-47 193.0 256 48.0
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.9e-46 190.3 262 46.2
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 1.9e-46 190.3 226 50.4
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 3.2e-46 189.5 214 53.7
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 4.2e-46 189.1 241 50.6
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 5.5e-46 188.7 226 48.2
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 4.6e-45 185.7 255 48.2
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.3e-44 184.1 241 47.3
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 5.1e-44 182.2 223 49.3
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 6.7e-44 181.8 238 51.3
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 1.1e-43 181.0 121 81.0
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.5e-43 180.6 232 48.3
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 1.5e-43 180.6 238 45.4
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 1.5e-43 180.6 246 48.0
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 2.5e-43 179.9 249 44.6
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 4.3e-43 179.1 228 50.0
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.3e-42 177.6 233 48.9
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 1.6e-42 177.2 233 49.8
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 4.8e-42 175.6 223 48.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 4.8e-42 175.6 223 48.9
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.1e-41 174.5 247 46.6
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 3.1e-41 172.9 245 43.7
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.2e-40 171.0 259 51.7
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 2.0e-40 170.2 235 47.2
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 3.4e-40 169.5 227 48.9
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 3.4e-40 169.5 241 46.1
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 3.4e-40 169.5 241 46.1
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 5.9e-40 168.7 230 51.3
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.0e-39 167.9 241 46.5
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 5.0e-39 165.6 120 72.5
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 6.5e-39 165.2 241 45.6
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 8.5e-39 164.9 234 46.6
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 8.5e-39 164.9 241 46.1
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.1e-38 164.5 252 45.2
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.4e-38 164.1 233 45.5
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.9e-38 163.7 252 45.6
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 3.6e-37 159.5 122 70.5
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 1.4e-28 131.0 238 37.4
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 1.1e-27 127.9 124 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 1.0e-23 114.8 122 55.7
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 2.5e-22 110.2 125 50.4
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 9.4e-22 108.2 129 45.7
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 2.7e-21 106.7 161 42.9
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 8.0e-21 105.1 123 53.7
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 2.3e-20 103.6 146 39.7
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 3.0e-20 103.2 95 56.8
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 1.5e-14 84.3 121 43.8
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 4.4e-11 72.8 209 35.9
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.2e-08 64.7 114 38.6
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.5e-06 57.0 51 58.8


User provided reference genes

Program Settings