Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.4e-125 452.2 232 100.0
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 7.0e-85 317.8 230 74.3
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 2.7e-84 315.8 232 74.1
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 5.9e-84 314.7 232 72.8
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 3.0e-83 312.4 227 74.9
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 2.5e-82 309.3 229 74.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 5.8e-79 298.1 232 72.4
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.7e-78 296.6 154 100.0
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 3.7e-78 295.4 227 71.8
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.3e-74 282.3 228 68.9
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 2.7e-68 262.7 164 82.3
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 6.0e-68 261.5 232 65.1
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 9.5e-66 254.2 238 62.2
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.1e-65 253.1 237 61.2
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.1e-65 253.1 240 57.1
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 6.2e-65 251.5 232 60.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.4e-64 250.4 238 59.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.8e-64 250.0 234 59.8
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 2.4e-64 249.6 234 59.0
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.0e-64 248.8 236 59.3
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.2e-64 248.4 233 62.2
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.0e-63 246.5 238 60.1
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.6e-63 244.6 232 60.3
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.3e-62 243.8 236 60.2
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.2e-62 243.0 229 60.7
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.9e-62 242.7 232 59.5
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 2.9e-62 242.7 236 58.1
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.8e-62 242.3 232 59.5
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 3.8e-62 242.3 228 57.9
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 6.4e-62 241.5 234 58.1
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.1e-61 240.7 234 58.5
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.4e-61 240.4 234 58.1
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.4e-61 239.6 234 57.7
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.2e-61 239.2 232 58.6
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 9.2e-61 237.7 231 60.2
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.8e-60 234.6 235 57.0
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.0e-59 232.6 235 56.6
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.0e-59 232.6 234 56.0
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.1e-59 231.9 235 56.2
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.5e-58 230.3 251 53.8
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 4.3e-58 228.8 222 59.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 7.3e-58 228.0 233 57.9
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.2e-57 227.3 145 85.5
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.1e-57 226.5 235 55.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.7e-57 225.3 231 55.8
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 8.1e-57 224.6 281 49.8
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.4e-56 223.8 237 54.4
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.1e-56 222.6 235 57.4
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.1e-56 222.6 226 55.8
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 3.1e-56 222.6 232 58.2
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.1e-56 222.6 237 54.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.9e-56 221.5 232 57.8
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.5e-55 220.3 233 57.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.5e-55 220.3 241 57.7
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 2.0e-55 219.9 241 57.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 4.4e-55 218.8 232 56.9
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.8e-55 218.4 235 54.5
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 9.9e-55 217.6 241 57.3
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.9e-54 216.1 241 55.2
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.9e-54 216.1 235 54.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 3.8e-54 215.7 240 56.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.1e-53 214.2 155 69.7
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.4e-53 213.8 187 62.6
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 4.2e-53 212.2 154 71.4
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 4.2e-53 212.2 239 54.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 7.1e-53 211.5 232 56.9
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.7e-51 206.8 234 53.8
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 3.9e-51 205.7 182 65.4
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.1e-50 204.1 232 53.4
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 1.9e-50 203.4 161 67.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.5e-50 203.0 232 53.9
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 3.3e-50 202.6 168 68.5
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 9.6e-50 201.1 236 50.0
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.3e-49 200.7 236 53.4
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.6e-49 200.3 162 67.9
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.8e-49 199.5 225 50.2
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 4.8e-49 198.7 234 52.6
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.1e-48 197.6 180 60.6
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 3.1e-48 196.1 226 53.1
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 9.0e-48 194.5 150 69.3
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 3.4e-47 192.6 233 49.8
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 3.4e-47 192.6 181 59.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 5.8e-47 191.8 233 50.2
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.3e-46 190.7 148 68.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.3e-46 190.7 155 64.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 2.2e-46 189.9 154 65.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.9e-46 188.7 225 50.2
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 6.4e-46 188.3 233 50.6
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 6.4e-46 188.3 236 50.8
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 6.4e-46 188.3 233 49.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 8.4e-46 188.0 156 66.0
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.4e-45 187.2 176 57.4
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-45 187.2 145 72.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.4e-45 187.2 179 58.1
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 3.2e-45 186.0 233 51.1
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 7.1e-45 184.9 233 51.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 9.3e-45 184.5 232 49.1
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 9.3e-45 184.5 193 56.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.7e-44 183.0 181 58.0
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 3.5e-44 182.6 146 67.1
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 6.0e-44 181.8 233 49.4
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 6.0e-44 181.8 230 48.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.0e-43 181.0 157 60.5
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 2.3e-43 179.9 181 56.9
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 5.1e-43 178.7 145 66.2
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 6.7e-43 178.3 232 49.6
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 8.7e-43 177.9 155 63.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 8.7e-43 177.9 154 62.3
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 8.7e-43 177.9 155 63.9
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 8.7e-43 177.9 154 62.3
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 4.3e-42 175.6 154 61.7
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 7.4e-42 174.9 236 49.2
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 6.2e-41 171.8 171 55.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 8.1e-41 171.4 151 62.9
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 9.9e-39 164.5 144 61.8
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.9e-38 162.9 142 64.8
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.9e-38 162.9 152 58.6
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.4e-37 160.6 200 50.5
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.6e-36 157.1 138 60.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.8e-35 153.7 153 56.9
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 5.6e-34 148.7 172 50.6
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 7.4e-34 148.3 236 42.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 4.8e-33 145.6 195 48.2
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 4.5e-31 139.0 175 53.7
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 3.8e-30 136.0 130 60.0
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.5e-30 135.2 131 60.3
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.7e-28 129.8 88 71.6
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.7e-28 129.8 121 64.5
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.7e-26 122.1 179 45.3
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.8e-24 117.1 200 39.0
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 5.3e-24 115.5 92 62.0
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 1.5e-23 114.0 150 45.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.9e-23 112.1 161 47.2
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.7e-22 110.5 78 70.5
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 8.5e-22 108.2 96 63.5
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 7.9e-20 101.7 166 40.4
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.9e-18 97.1 162 40.7
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 7.4e-18 95.1 197 39.1
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.3e-17 94.4 109 53.2
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 1.7e-17 94.0 100 52.0
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.7e-14 84.0 104 47.1
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 3.2e-13 79.7 95 53.7
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 7.2e-13 78.6 107 47.7
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 1.2e-12 77.8 88 46.6
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 3.6e-12 76.3 128 43.0
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-11 72.0 71 53.5
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.4e-10 69.3 51 68.6
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.8e-09 65.9 105 47.6
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 2.4e-08 63.5 196 31.1
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.3e-08 62.4 38 73.7


User provided reference genes

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