Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KV01DF Arachis hypogaea HOM05D005635 ORTHO05D006838 0.0e+00 1322.0 694 100.0
arahy.Tifrunner.gnm1.ann1.0WSK8D Arachis hypogaea HOM05D005635 ORTHO05D006838 0.0e+00 1205.7 706 91.9
Glyma.11G255300 Glycine max HOM05D005635 ORTHO05D006838 6.0e-257 891.0 699 68.8
Glyma.18G001800 Glycine max HOM05D005635 ORTHO05D006838 1.0e-256 890.2 699 68.2
VMungo1383G0014 Vigna mungo HOM05D005635 ORTHO05D006838 5.8e-244 847.8 701 66.5
Phvul.001G267200 Phaseolus vulgaris HOM05D005635 ORTHO05D006838 6.9e-237 824.3 702 65.2
Lj6g0024009 Lotus japonicus HOM05D005635 ORTHO05D006838 2.3e-232 809.3 699 64.4
Medtr3g084030 Medicago truncatula HOM05D005635 ORTHO05D006838 1.4e-229 800.0 698 64.8
Ca_16400_v3 Cicer arietinum L. HOM05D005635 ORTHO05D006838 7.9e-225 784.3 678 64.0
Psat5g100720 Pisum sativum HOM05D005635 ORTHO05D006838 8.8e-200 701.0 697 58.1
QL10p057536 Quercus lobata HOM05D005635 ORTHO05D006838 2.3e-192 676.4 729 52.8
QL10p057166 Quercus lobata HOM05D005635 ORTHO05D006838 8.8e-192 674.5 729 52.7
Lalb_Chr23g0278351 Lupinus albus HOM05D005635 ORTHO05D006838 4.9e-182 642.1 701 55.3
Potri.013G128300 Populus trichocarpa HOM05D005635 ORTHO05D006838 8.6e-179 631.3 714 50.8
GSVIVG01038182001 Vitis vinifera HOM05D005635 ORTHO05D006838 1.2e-177 627.5 698 51.3
Cfa015678 Carpinus fangiana HOM05D005635 ORTHO05D006838 3.1e-176 622.9 699 51.4
Cpa.g.sc9.387 Carica papaya HOM05D005635 ORTHO05D006838 4.0e-176 622.5 718 49.0
MD15G1148200 Malus domestica HOM05D005635 ORTHO05D006838 6.8e-176 621.7 708 51.0
CiPaw.01G169400 Carya illinoinensis HOM05D005635 ORTHO05D006838 1.2e-175 620.9 716 49.0
TPR.G17194 Trifolium pratense HOM05D005635 ORTHO05D006838 1.3e-174 617.5 605 58.2
Duzib151G1049 Durio zibethinus HOM05D005635 ORTHO05D006838 1.1e-168 597.8 716 47.8
FAN23G1844 Fragaria x ananassa HOM05D005635 ORTHO05D006838 5.2e-168 595.5 708 49.9
Thecc.04G163300 Theobroma cacao HOM05D005635 ORTHO05D006838 8.9e-168 594.7 716 48.0
CSS0001444 Camellia sinensis var. sinensis HOM05D005635 ORTHO05D006838 2.6e-167 593.2 706 47.2
Manes.05G131200 Manihot esculenta HOM05D005635 ORTHO05D006838 3.7e-166 589.3 706 49.3
Duzib212G0953 Durio zibethinus HOM05D005635 ORTHO05D006838 1.2e-164 584.3 716 47.9
TAR362G0201 Trochodendron aralioides HOM05D005635 ORTHO05D006838 3.5e-164 582.8 719 46.9
Gorai.006G232500 Gossypium raimondii HOM05D005635 ORTHO05D006838 7.3e-162 575.1 701 47.8
Gohir.A09G213616 Gossypium hirsutum HOM05D005635 ORTHO05D006838 1.1e-160 571.2 703 46.7
TWI15G0946 Tripterygium wilfordii HOM05D005635 ORTHO05D006838 8.9e-160 568.2 717 46.9
Gohir.D09G212700 Gossypium hirsutum HOM05D005635 ORTHO05D006838 2.0e-159 567.0 700 47.0
Nn7g37529 Nelumbo nucifera HOM05D005635 ORTHO05D006838 2.0e-159 567.0 744 46.6
FvH4_1g00540 Fragaria vesca HOM05D005635 ORTHO05D006838 4.4e-159 565.8 717 46.9
THA.LOC104802334 Tarenaya hassleriana HOM05D005635 ORTHO05D006838 2.9e-158 563.1 713 46.3
FAN28G2262 Fragaria x ananassa HOM05D005635 ORTHO05D006838 2.4e-157 560.1 712 46.5
RcHm_v2.0_Chr2g0085171 Rosa chinensis HOM05D005635 ORTHO05D006838 2.4e-157 560.1 716 48.0
CANSAT56G0139 Cannabis sativa HOM05D005635 ORTHO05D006838 3.5e-156 556.2 704 46.0
Aa31LG10G14030 Aethionema arabicum HOM05D005635 ORTHO05D006838 2.0e-151 540.4 695 45.8
BolC6t37802H Brassica oleracea HOM05D005635 ORTHO05D006838 8.4e-150 535.0 704 44.9
AL5G41820 Arabidopsis lyrata HOM05D005635 ORTHO05D006838 2.7e-148 530.0 543 52.3
Sopen03g013370 Solanum pennellii HOM05D005635 ORTHO05D006838 3.5e-148 529.6 704 44.6
Gohir.A10G145200 Gossypium hirsutum HOM05D005635 ORTHO05D006838 1.0e-147 528.1 682 46.2
Gohir.D10G121800 Gossypium hirsutum HOM05D005635 ORTHO05D006838 1.7e-147 527.3 682 46.2
Haze_00856 Corylus avellana HOM05D005635 ORTHO05D006838 2.3e-147 526.9 766 43.3
MELO3C010738.2 Cucumis melo HOM05D005635 ORTHO05D006838 2.3e-147 526.9 696 45.0
Hma1.2p1_1156F.1_g262300 Hydrangea macrophylla HOM05D005635 ORTHO05D006838 3.9e-147 526.2 699 45.9
Gorai.011G133900 Gossypium raimondii HOM05D005635 ORTHO05D006838 6.6e-147 525.4 682 46.0
BraA07t30126Z Brassica rapa HOM05D005635 ORTHO05D006838 3.3e-146 523.1 555 51.0
Dinv18319 Davidia involucrata HOM05D005635 ORTHO05D006838 3.3e-146 523.1 643 47.1
MD02G1004500 Malus domestica HOM05D005635 ORTHO05D006838 4.3e-146 522.7 740 43.8
Sabra13G0107200 Salix brachista HOM05D005635 ORTHO05D006838 4.5e-143 512.7 826 40.2
Sp5g03370 Schrenkiella parvula HOM05D005635 ORTHO05D006838 4.5e-143 512.7 574 50.3
BcaC08g45005 Brassica carinata HOM05D005635 ORTHO05D006838 5.8e-143 512.3 559 49.4
Thhalv10005829m.g Eutrema salsugineum HOM05D005635 ORTHO05D006838 7.6e-143 511.9 706 44.9
Sed0015570 Sechium edule HOM05D005635 ORTHO05D006838 9.9e-143 511.5 696 43.2
Hund22526 Selenicereus undatus HOM05D005635 ORTHO05D006838 3.8e-142 509.6 693 44.9
MBI07_g33481_MAGBIO Magnolia biondii HOM05D005635 ORTHO05D006838 6.4e-142 508.8 751 43.0
AUR62002413 Chenopodium quinoa HOM05D005635 ORTHO05D006838 8.4e-142 508.4 725 42.6
Prupe.7G266600 Prunus persica HOM05D005635 ORTHO05D006838 8.4e-142 508.4 642 46.3
ClCG08G017200 Citrullus lanatus HOM05D005635 ORTHO05D006838 1.4e-141 507.7 720 43.6
CsaV3_2G025410 Cucumis sativus L. HOM05D005635 ORTHO05D006838 4.2e-141 506.1 696 44.4
Rhsim09G0007900 Rhododendron simsii HOM05D005635 ORTHO05D006838 5.4e-141 505.8 712 43.5
FAN26G0446 Fragaria x ananassa HOM05D005635 ORTHO05D006838 1.2e-140 504.6 712 43.4
C06p26400 Brassica napus HOM05D005635 ORTHO05D006838 2.1e-140 503.8 557 49.0
BcaB02g07447 Brassica carinata HOM05D005635 ORTHO05D006838 1.8e-139 500.7 544 48.7
Cc03_g14460 Coffea canephora HOM05D005635 ORTHO05D006838 2.3e-139 500.4 706 43.2
AUR62023776 Chenopodium quinoa HOM05D005635 ORTHO05D006838 8.7e-139 498.4 700 43.1
Eucgr.L00011 Eucalyptus grandis HOM05D005635 ORTHO05D006838 7.4e-138 495.4 695 44.0
Peaxi162Scf00883g00320 Petunia axillaris HOM05D005635 ORTHO05D006838 2.4e-136 490.3 723 42.0
AT3G59780 Arabidopsis thaliana HOM05D005635 ORTHO05D006838 6.9e-136 488.8 734 41.3
DCAR_029617 Daucus carota HOM05D005635 ORTHO05D006838 9.9e-135 485.0 540 50.7
Lj3C160T4 Lonicera japonica HOM05D005635 ORTHO05D006838 2.2e-134 483.8 609 47.3
A07p24820 Brassica napus HOM05D005635 ORTHO05D006838 3.2e-133 479.9 570 47.7
EL10Ac3g06107 Beta vulgaris HOM05D005635 ORTHO05D006838 6.0e-132 475.7 694 42.2
Aqoxy5G00015 Aquilegia oxysepala HOM05D005635 ORTHO05D006838 2.3e-131 473.8 574 44.9
Migut.D00990 Erythranthe guttata HOM05D005635 ORTHO05D006838 1.5e-130 471.1 570 46.5
Atru.chr4.1471 Acer truncatum HOM05D005635 ORTHO05D006838 2.8e-129 466.8 604 46.0
CARHR170120 Cardamine hirsuta HOM05D005635 ORTHO05D006838 2.8e-129 466.8 694 41.1
PSO832G1829 Papaver somniferum HOM05D005635 ORTHO05D006838 4.5e-127 459.5 709 41.9
Sc19g0006380 Simmondsia chinensis HOM05D005635 ORTHO05D006838 3.8e-126 456.4 720 41.2
SalBow7G2884 Salvia bowleyana HOM05D005635 ORTHO05D006838 2.5e-125 453.8 703 41.8
ATR0743G254 Amborella trichopoda HOM05D005635 ORTHO05D006838 4.2e-125 453.0 724 40.6
HanXRQChr02g0059091 Helianthus annuus HOM05D005635 ORTHO05D006838 2.8e-121 440.3 554 45.5
PSO210G4833 Papaver somniferum HOM05D005635 ORTHO05D006838 1.1e-120 438.3 709 41.3
Nitab4.5_0000064g0020 Nicotiana tabacum HOM05D005635 ORTHO05D006838 2.0e-119 434.1 618 44.8
SGA_v2.0_scaffold66G22529 Striga asiatica HOM05D005635 ORTHO05D006838 1.3e-118 431.4 599 42.7
Os01g0896500 Oryza sativa ssp. japonica HOM05D005635 ORTHO05D006838 1.8e-115 421.0 576 44.3
HPP92_007033 Vanilla planifolia HOM05D005635 ORTHO05D006838 5.1e-115 419.5 561 42.6
PGR042G2382 Punica granatum HOM05D005635 ORTHO05D006838 6.7e-115 419.1 605 43.0
HPP92_007065 Vanilla planifolia HOM05D005635 ORTHO05D006838 5.7e-114 416.0 561 42.1
Sed0022147 Sechium edule HOM05D005635 ORTHO05D006838 1.4e-112 411.4 686 39.1
Zm00001eb144770 Zea mays HOM05D005635 ORTHO05D006838 1.3e-110 404.8 547 45.0
Nitab4.5_0002913g0010 Nicotiana tabacum HOM05D005635 ORTHO05D006838 1.7e-110 404.4 519 47.6
Hma1.2p1_1156F.1_g262310 Hydrangea macrophylla HOM05D005635 ORTHO05D006838 2.9e-110 403.7 455 49.5
ECA233G1690 Erigeron canadensis HOM05D005635 ORTHO05D006838 1.3e-105 388.3 522 44.6
Lsat_1_v5_gn_6_67720 Lactuca sativa HOM05D005635 ORTHO05D006838 6.3e-105 386.0 547 42.2
Solyc03g059180.4 Solanum lycopersicum HOM05D005635 ORTHO05D006838 5.3e-104 382.9 611 39.0
vmacro00684 Vaccinium macrocarpon HOM05D005635 ORTHO05D006838 3.7e-97 360.1 627 39.4
unitig_32.g10984 Utricularia gibba HOM05D005635 ORTHO05D006838 1.1e-96 358.6 547 40.4
Atru.chr4.1498 Acer truncatum HOM05D005635 ORTHO05D006838 9.7e-90 335.5 259 68.3
SEGI_21812 Sequoiadendron giganteum HOM05D005635 ORTHO05D006838 2.2e-89 334.3 563 38.5
Oeu017118.1 Olea europaea HOM05D005635 ORTHO05D006838 1.1e-80 305.4 379 45.9
Mapoly0056s0110 Marchantia polymorpha HOM05D005635 ORTHO05D006838 1.2e-74 285.4 431 37.6
Pp3c5_10150 Physcomitrium patens HOM05D005635 ORTHO05D006838 2.3e-70 271.2 546 33.2
Carub.0005s2650 Capsella rubella HOM05D005635 ORTHO05D006838 7.8e-63 246.1 191 66.5
SalBow1G7464 Salvia bowleyana HOM05D005635 ORTHO05D006838 2.3e-62 244.6 369 38.8
CAN.G207.4 Capsicum annuum HOM05D005635 ORTHO05D006838 5.2e-59 233.4 350 39.1
CBR_g30747 Chara braunii HOM05D005635 ORTHO05D006838 2.0e-50 204.9 533 29.1
AagrBONN_evm.TU.Sc2ySwM_344.4224 Anthoceros agrestis HOM05D005635 ORTHO05D006838 4.3e-45 187.2 375 33.1
Carub.0005s2649 Capsella rubella HOM05D005635 ORTHO05D006838 2.1e-36 158.3 252 36.1
Solyc03g059170.2 Solanum lycopersicum HOM05D005635 ORTHO05D006838 1.7e-33 148.7 118 66.1
Ca_19887_v3 Cicer arietinum L. HOM05D005635 ORTHO05D006838 2.4e-32 144.8 155 56.1
Atru.chr4.1500 Acer truncatum HOM05D005635 ORTHO05D006838 5.4e-32 143.7 286 36.7
TPR.G35147 Trifolium pratense HOM05D005635 ORTHO05D006838 7.1e-32 143.3 92 81.5
Potri.019G097901 Populus trichocarpa HOM05D005635 ORTHO05D006838 1.9e-29 135.2 116 62.1
Potri.019G095833 Populus trichocarpa HOM05D005635 ORTHO05D006838 7.3e-29 133.3 116 59.5
Potri.019G098001 Populus trichocarpa HOM05D005635 ORTHO05D006838 9.6e-29 132.9 251 37.8
VMungo1127G1500 Vigna mungo HOM05D005635 ORTHO05D006838 6.2e-28 130.2 84 78.6
CSS0016204 Camellia sinensis var. sinensis HOM05D005635 ORTHO05D006838 7.4e-21 106.7 87 66.7
Potri.014G182410 Populus trichocarpa HOM05D005635 ORTHO05D006838 5.3e-19 100.5 125 48.0
C08p34730 Brassica napus HOM05D005635 ORTHO05D006838 5.5e-16 90.5 93 53.8
Oeu023600.1 Olea europaea HOM05D005635 ORTHO05D006838 2.7e-15 88.2 73 69.9
BolC8t51075H Brassica oleracea HOM05D005635 ORTHO05D006838 3.9e-14 84.3 82 54.9
RcHm_v2.0_Chr6g0284261 Rosa chinensis HOM05D005635 ORTHO05D006838 3.9e-14 84.3 63 71.4
CARHR151070 Cardamine hirsuta HOM05D005635 ORTHO05D006838 1.5e-13 82.4 146 34.2
BcaC07g40503 Brassica carinata HOM05D005635 ORTHO05D006838 2.8e-12 78.2 52 73.1
Cre05.g247450 Chlamydomonas reinhardtii HOM05D005635 ORTHO05D006838 6.2e-12 77.0 281 26.0
BcaC07g40447 Brassica carinata HOM05D005635 ORTHO05D006838 1.2e-10 72.8 53 71.7
PGR044G0369 Punica granatum HOM05D005635 ORTHO05D006838 4.5e-10 70.9 53 73.6
MCO14G011 Micromonas commoda HOM05D005635 ORTHO05D006838 2.5e-08 65.1 212 27.8
BcaB02g07446 Brassica carinata HOM05D000137 ORTHO05D021629 1.2e-07 62.8 50 58.0
Potri.019G098950 Populus trichocarpa HOM05D005635 ORTHO05D006838 2.7e-07 61.6 74 41.9
Atru.chr4.1499 Acer truncatum HOM05D005635 ORTHO05D006838 6.0e-07 60.5 49 65.3
CARHR183720 Cardamine hirsuta HOM05D005635 ORTHO05D006838 1.0e-06 59.7 169 30.2


User provided reference genes

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