Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KUDF2Y Arachis hypogaea HOM05D015962 ORTHO05D084632 2.8e-183 645.2 338 100.0
arahy.Tifrunner.gnm1.ann1.N3JAWC Arachis hypogaea HOM05D015962 ORTHO05D085643 1.7e-119 433.3 239 95.0
arahy.Tifrunner.gnm1.ann1.B9URUB Arachis hypogaea HOM05D015962 ORTHO05D083682 2.3e-108 396.4 266 82.0
arahy.Tifrunner.gnm1.ann1.YS6756 Arachis hypogaea HOM05D015962 ORTHO05D003000 1.8e-105 386.7 333 68.5
arahy.Tifrunner.gnm1.ann1.UWF6SM Arachis hypogaea HOM05D015962 ORTHO05D003000 1.9e-94 350.1 348 62.1
arahy.Tifrunner.gnm1.ann1.CLNG3D Arachis hypogaea HOM05D015962 ORTHO05D003000 3.6e-37 159.8 180 55.0
arahy.Tifrunner.gnm1.ann1.W1BWJE Arachis hypogaea HOM05D002658 ORTHO05D003000 2.3e-20 104.0 451 32.2
arahy.Tifrunner.gnm1.ann1.WJAM6V Arachis hypogaea HOM05D002658 ORTHO05D003000 1.4e-17 94.7 133 47.4
Lj6g0006101 Lotus japonicus HOM05D005459 ORTHO05D006751 8.3e-10 68.9 64 62.5
ClCG05G008710 Citrullus lanatus HOM05D005459 ORTHO05D006751 2.4e-09 67.4 118 40.7
Phvul.001G060700 Phaseolus vulgaris HOM05D005459 ORTHO05D006751 2.4e-09 67.4 64 59.4
Lj3C911T3 Lonicera japonica HOM05D005459 ORTHO05D006751 3.1e-09 67.0 64 59.4
VMungo0647G0684 Vigna mungo HOM05D005459 ORTHO05D006751 4.1e-09 66.6 64 59.4
arahy.Tifrunner.gnm1.ann1.4K87U1 Arachis hypogaea HOM05D000240 ORTHO05D001140 5.4e-09 66.2 81 48.1
arahy.Tifrunner.gnm1.ann1.M376CB Arachis hypogaea HOM05D000240 ORTHO05D001140 5.4e-09 66.2 81 48.1
Medtr7g100940 Medicago truncatula HOM05D005459 ORTHO05D006751 7.0e-09 65.9 64 59.4
arahy.Tifrunner.gnm1.ann1.7I62GA Arachis hypogaea HOM05D005459 ORTHO05D006751 9.2e-09 65.5 38 92.1
arahy.Tifrunner.gnm1.ann1.QW5IMS Arachis hypogaea HOM05D005459 ORTHO05D006751 9.2e-09 65.5 38 92.1
Ca_12679_v3 Cicer arietinum L. HOM05D005459 ORTHO05D006751 9.2e-09 65.5 64 59.4
Medtr1g028510 Medicago truncatula HOM05D005459 ORTHO05D006751 9.2e-09 65.5 64 59.4
PSO384G0956 Papaver somniferum HOM05D005459 ORTHO05D006751 9.2e-09 65.5 121 38.8
Psat6g038640 Pisum sativum HOM05D005459 ORTHO05D006751 9.2e-09 65.5 64 59.4
TPR.G33293 Trifolium pratense HOM05D005459 ORTHO05D006751 9.2e-09 65.5 64 59.4
Lalb_Chr10g0091331 Lupinus albus HOM05D005459 ORTHO05D006751 1.2e-08 65.1 64 57.8
Sed0000581 Sechium edule HOM05D005459 ORTHO05D006751 1.6e-08 64.7 64 56.2
TAR629G0401 Trochodendron aralioides HOM05D005459 ORTHO05D006751 1.6e-08 64.7 68 54.4
EL10Ac3g05347 Beta vulgaris HOM05D005459 ORTHO05D006751 2.0e-08 64.3 89 46.1
QL09p010988 Quercus lobata HOM05D005459 ORTHO05D006751 2.0e-08 64.3 64 56.2
AUR62006152 Chenopodium quinoa HOM05D005459 ORTHO05D006751 2.7e-08 63.9 89 46.1
Glyma.10G065800 Glycine max HOM05D005459 ORTHO05D006751 2.7e-08 63.9 64 56.2
PSO135G0062 Papaver somniferum HOM05D005459 ORTHO05D006751 3.5e-08 63.5 66 56.1
BcaC06g31482 Brassica carinata HOM05D005459 ORTHO05D006751 4.5e-08 63.2 66 53.0
Gohir.D12G252700 Gossypium hirsutum HOM05D005459 ORTHO05D006751 4.5e-08 63.2 83 49.4
Gohir.D12G253700 Gossypium hirsutum HOM05D005459 ORTHO05D006751 4.5e-08 63.2 83 49.4
Gorai.008G270800 Gossypium raimondii HOM05D005459 ORTHO05D006751 4.5e-08 63.2 83 49.4
COL.COLO4_35657 Corchorus olitorius HOM05D005459 ORTHO05D006751 5.9e-08 62.8 64 54.7
Glyma.14G160900 Glycine max HOM05D005459 ORTHO05D006751 5.9e-08 62.8 64 54.7
Lj3g0011348 Lotus japonicus HOM05D000240 ORTHO05D001140 5.9e-08 62.8 81 45.7
GSVIVG01028720001 Vitis vinifera HOM05D005459 ORTHO05D006751 5.9e-08 62.8 64 54.7
AUR62019336 Chenopodium quinoa HOM05D005459 ORTHO05D006751 7.8e-08 62.4 64 54.7
DCAR_024416 Daucus carota HOM05D005459 ORTHO05D006751 7.8e-08 62.4 64 54.7
Gohir.A12G251800 Gossypium hirsutum HOM05D005459 ORTHO05D006751 1.0e-07 62.0 64 54.7
MBI06_g32757_MAGBIO Magnolia biondii HOM05D005459 ORTHO05D006751 1.0e-07 62.0 64 54.7
PGR142G2821 Punica granatum HOM05D005459 ORTHO05D006751 1.0e-07 62.0 64 54.7
Dinv35306 Davidia involucrata HOM05D005459 ORTHO05D006751 1.3e-07 61.6 69 52.2
Duzib084G0355 Durio zibethinus HOM05D005459 ORTHO05D006751 1.3e-07 61.6 64 53.1
Gorai.002G148900 Gossypium raimondii HOM05D000240 ORTHO05D001140 1.3e-07 61.6 67 47.8
Thecc.03G192700 Theobroma cacao HOM05D005459 ORTHO05D006751 1.3e-07 61.6 64 53.1
ATR0661G386 Amborella trichopoda HOM05D005459 ORTHO05D006751 1.7e-07 61.2 68 52.9
MELO3C026934.2 Cucumis melo HOM05D005459 ORTHO05D006751 1.7e-07 61.2 62 54.8
CsaV3_3G021950 Cucumis sativus L. HOM05D005459 ORTHO05D006751 1.7e-07 61.2 68 51.5
Lsat_1_v5_gn_2_134221 Lactuca sativa HOM05D005459 ORTHO05D006751 1.7e-07 61.2 69 52.2
MD07G1285000 Malus domestica HOM05D005459 ORTHO05D006751 1.7e-07 61.2 64 54.7
Hund04829 Selenicereus undatus HOM05D005459 ORTHO05D006751 1.7e-07 61.2 68 52.9
TWI39G1077 Tripterygium wilfordii HOM05D005459 ORTHO05D006751 1.7e-07 61.2 69 50.7
Zm00001eb137120 Zea mays HOM05D005459 ORTHO05D006751 1.7e-07 61.2 44 65.9
Atru.chr1.246 Acer truncatum HOM05D005459 ORTHO05D006751 2.3e-07 60.8 38 78.9
Actinidia03157 Actinidia chinensis HOM05D005459 ORTHO05D006751 2.3e-07 60.8 64 54.7
Ah.13g069870 Amaranthus hybridus HOM05D005459 ORTHO05D006751 2.3e-07 60.8 68 50.0
BolC7t43505H Brassica oleracea HOM05D005459 ORTHO05D006751 2.3e-07 60.8 66 51.5
CANSAT64G0927 Cannabis sativa HOM05D005459 ORTHO05D006751 2.3e-07 60.8 64 54.7
Medtr4g071900 Medicago truncatula HOM05D000240 ORTHO05D001140 2.3e-07 60.8 81 43.2
Psat7g139880 Pisum sativum HOM05D000240 ORTHO05D001140 2.3e-07 60.8 81 43.2
Rhsim09G0203700 Rhododendron simsii HOM05D005459 ORTHO05D006751 2.3e-07 60.8 64 56.2
Solyc06g051900.3 Solanum lycopersicum HOM05D005459 ORTHO05D006751 2.3e-07 60.8 41 80.5
Sopen06g017930 Solanum pennellii HOM05D005459 ORTHO05D006751 2.3e-07 60.8 41 80.5
C07p29540 Brassica napus HOM05D005459 ORTHO05D006751 2.9e-07 60.5 66 50.0
Lalb_Chr23g0265131 Lupinus albus HOM05D000240 ORTHO05D001140 2.9e-07 60.5 89 42.7
Lalb_Chr23g0265151 Lupinus albus HOM05D000240 ORTHO05D001140 2.9e-07 60.5 89 42.7
SHI02435 Sapria himalayana HOM05D005459 ORTHO05D006751 2.9e-07 60.5 64 56.2
THA.LOC104813180 Tarenaya hassleriana HOM05D005459 ORTHO05D006751 2.9e-07 60.5 65 52.3
Aqoxy7G00148 Aquilegia oxysepala HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 51.6
CSS0021725 Camellia sinensis var. sinensis HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 53.1
Cfa016362 Carpinus fangiana HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 53.1
Ciclev10007115m.g Citrus clementina HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 53.1
Haze_00111 Corylus avellana HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 53.1
Eucgr.K00329 Eucalyptus grandis HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 54.7
HanXRQChr14g0462841 Helianthus annuus HOM05D005459 ORTHO05D006751 3.8e-07 60.1 68 52.9
Nn3g17990 Nelumbo nucifera HOM05D005459 ORTHO05D006751 3.8e-07 60.1 64 56.2
CiPaw.06G007500 Carya illinoinensis HOM05D005459 ORTHO05D006751 5.0e-07 59.7 64 54.7
Lj1g0000591 Lotus japonicus HOM05D000240 ORTHO05D001140 5.0e-07 59.7 86 43.0
TAR145G0003 Trochodendron aralioides HOM05D000240 ORTHO05D001140 5.0e-07 59.7 84 42.9
arahy.Tifrunner.gnm1.ann1.PC551Y Arachis hypogaea HOM05D000240 ORTHO05D013495 6.6e-07 59.3 110 34.5
A06p46000 Brassica napus HOM05D005459 ORTHO05D006751 6.6e-07 59.3 66 50.0
BraA06t27464Z Brassica rapa HOM05D005459 ORTHO05D006751 6.6e-07 59.3 66 50.0
Ca_20934_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001140 6.6e-07 59.3 80 43.8
ECA246G1562 Erigeron canadensis HOM05D005459 ORTHO05D006751 6.6e-07 59.3 68 51.5
Phvul.011G038800 Phaseolus vulgaris HOM05D000240 ORTHO05D001140 6.6e-07 59.3 81 43.2
Zm00001eb410070 Zea mays HOM05D005459 ORTHO05D006751 6.6e-07 59.3 43 62.8
AL7G47930 Arabidopsis lyrata HOM05D005459 ORTHO05D006751 8.6e-07 58.9 66 50.0
AT5G41480 Arabidopsis thaliana HOM05D005459 ORTHO05D006751 8.6e-07 58.9 66 50.0
Hma1.2p1_0327F.1_g126720 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 8.6e-07 58.9 64 54.7
Hma1.2p1_0327F.1_g126730 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 8.6e-07 58.9 64 54.7
vmacro10106 Vaccinium macrocarpon HOM05D005459 ORTHO05D006751 8.6e-07 58.9 64 54.7
VMungo1309G1098 Vigna mungo HOM05D000240 ORTHO05D001140 8.6e-07 58.9 84 41.7
Cpa.g.sc3.50 Carica papaya HOM05D005459 ORTHO05D006751 1.1e-06 58.5 49 63.3
Thhalv10027718m.g Eutrema salsugineum HOM05D005459 ORTHO05D006751 1.1e-06 58.5 66 50.0
Lalb_Chr19g0138961 Lupinus albus HOM05D000240 ORTHO05D001140 1.1e-06 58.5 81 42.0
PGSC0003DMG400002352 Solanum tuberosum HOM05D005459 ORTHO05D006751 1.1e-06 58.5 37 83.8
CDE02G4072 Ceratophyllum demersum HOM05D005459 ORTHO05D006751 1.5e-06 58.2 163 29.4
Sc13g0009590 Simmondsia chinensis HOM05D005459 ORTHO05D006751 1.5e-06 58.2 48 66.7
CAN.G394.13 Capsicum annuum HOM05D005459 ORTHO05D006751 1.9e-06 57.8 148 35.1
Dinv42000 Davidia involucrata HOM05D000240 ORTHO05D001140 1.9e-06 57.8 84 41.7
RcHm_v2.0_Chr1g0380091 Rosa chinensis HOM05D005459 ORTHO05D006751 1.9e-06 57.8 68 50.0
TPR.G22383 Trifolium pratense HOM05D000240 ORTHO05D001140 1.9e-06 57.8 84 40.5
TAR376G0597 Trochodendron aralioides HOM05D000240 ORTHO05D001140 1.9e-06 57.8 81 43.2
TAR625G0658 Trochodendron aralioides HOM05D000240 ORTHO05D001140 1.9e-06 57.8 84 44.0
Glyma.11G110800 Glycine max HOM05D000240 ORTHO05D001140 2.5e-06 57.4 73 45.2
Lj4g0008815 Lotus japonicus HOM05D000240 ORTHO05D001140 2.5e-06 57.4 90 41.1
Manes.06G157100 Manihot esculenta HOM05D005459 ORTHO05D006751 2.5e-06 57.4 66 50.0
Prupe.2G307100 Prunus persica HOM05D005459 ORTHO05D006751 2.5e-06 57.4 64 53.1
SMO118G0218 Selaginella moellendorffii HOM05D005459 ORTHO05D006751 2.5e-06 57.4 44 70.5
THA.LOC104807771 Tarenaya hassleriana HOM05D000240 ORTHO05D001140 2.5e-06 57.4 80 42.5
VMungo1127G0831 Vigna mungo HOM05D000240 ORTHO05D001140 2.5e-06 57.4 81 43.2
Carub.0007s3402 Capsella rubella HOM05D005459 ORTHO05D006751 3.3e-06 57.0 66 48.5
Dinv23454 Davidia involucrata HOM05D000240 ORTHO05D001140 3.3e-06 57.0 84 41.7
Lalb_Chr03g0025351 Lupinus albus HOM05D000240 ORTHO05D001140 3.3e-06 57.0 81 45.7
MBI05_g14982_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001140 3.3e-06 57.0 84 41.7
Peaxi162Scf00618g00514 Petunia axillaris HOM05D005459 ORTHO05D006751 3.3e-06 57.0 38 78.9
HPP92_026772 Vanilla planifolia HOM05D005459 ORTHO05D006751 3.3e-06 57.0 64 46.9
AL4G10440 Arabidopsis lyrata HOM05D000240 ORTHO05D001140 4.3e-06 56.6 76 42.1
Carub.0004s0034 Capsella rubella HOM05D000240 ORTHO05D001140 4.3e-06 56.6 76 42.1
Eucgr.J02403 Eucalyptus grandis HOM05D000240 ORTHO05D001140 4.3e-06 56.6 95 41.1
Glyma.06G008000 Glycine max HOM05D000240 ORTHO05D001140 4.3e-06 56.6 86 43.0
Glyma.12G037100 Glycine max HOM05D000240 ORTHO05D001140 4.3e-06 56.6 81 42.0
Sp7g00510 Schrenkiella parvula HOM05D005459 ORTHO05D006751 4.3e-06 56.6 66 48.5
Aa31LG9G520 Aethionema arabicum HOM05D005459 ORTHO05D006751 5.6e-06 56.2 66 47.0
BraA09t41223Z Brassica rapa HOM05D000240 ORTHO05D001140 5.6e-06 56.2 77 41.6
FvH4_7g31010 Fragaria vesca HOM05D005459 ORTHO05D006751 5.6e-06 56.2 64 51.6
FAN06G0889 Fragaria x ananassa HOM05D005459 ORTHO05D006751 5.6e-06 56.2 64 51.6
FAN06G3802 Fragaria x ananassa HOM05D005459 ORTHO05D006751 5.6e-06 56.2 64 51.6
Oeu048309.1 Olea europaea HOM05D000240 ORTHO05D001140 5.6e-06 56.2 81 40.7
Phvul.009G003000 Phaseolus vulgaris HOM05D000240 ORTHO05D001140 5.6e-06 56.2 84 40.5
THA.LOC104804112 Tarenaya hassleriana HOM05D000240 ORTHO05D001140 5.6e-06 56.2 84 39.3
Actinidia15391 Actinidia chinensis HOM05D000240 ORTHO05D001140 7.3e-06 55.8 80 43.8
Aa31LG7G15190 Aethionema arabicum HOM05D000240 ORTHO05D001140 7.3e-06 55.8 76 43.4
EL10Ac9g21637 Beta vulgaris HOM05D000240 ORTHO05D001140 7.3e-06 55.8 84 41.7
Nitab4.5_0004934g0010 Nicotiana tabacum HOM05D005459 ORTHO05D006751 7.3e-06 55.8 37 81.1
SalBow2G0671 Salvia bowleyana HOM05D005459 ORTHO05D006751 7.3e-06 55.8 122 37.7
BcaB08g34981 Brassica carinata HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
BcaC07g41157 Brassica carinata HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
A09p58320 Brassica napus HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
C08p41650 Brassica napus HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
BolC8t51728H Brassica oleracea HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
CAN.G589.10 Capsicum annuum HOM05D005459 ORTHO05D006751 9.5e-06 55.5 36 80.6
Thhalv10000043m.g Eutrema salsugineum HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
FAN01G1429 Fragaria x ananassa HOM05D005459 ORTHO05D006751 9.5e-06 55.5 38 76.3
FAN10G1158 Fragaria x ananassa HOM05D005459 ORTHO05D006751 9.5e-06 55.5 38 76.3
Gohir.D11G185200 Gossypium hirsutum HOM05D000240 ORTHO05D001140 9.5e-06 55.5 90 41.1
Gorai.007G196800 Gossypium raimondii HOM05D000240 ORTHO05D001140 9.5e-06 55.5 90 41.1
Potri.015G022400 Populus trichocarpa HOM05D005459 ORTHO05D006751 9.5e-06 55.5 64 50.0
Sp4g00490 Schrenkiella parvula HOM05D000240 ORTHO05D001140 9.5e-06 55.5 76 42.1
TWI53G1266 Tripterygium wilfordii HOM05D000240 ORTHO05D001140 9.5e-06 55.5 95 42.1


User provided reference genes

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