Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KU7V2S Arachis hypogaea HOM05D002590 ORTHO05D002763 1.0e-206 723.4 424 100.0
arahy.Tifrunner.gnm1.ann1.WNQW91 Arachis hypogaea HOM05D002590 ORTHO05D002763 2.1e-167 592.8 333 93.4
arahy.Tifrunner.gnm1.ann1.ZD0NI5 Arachis hypogaea HOM05D002590 ORTHO05D002763 2.1e-167 592.8 333 93.4
Glyma.01G019800 Glycine max HOM05D002590 ORTHO05D002763 1.6e-111 407.1 341 66.3
Glyma.09G202600 Glycine max HOM05D002590 ORTHO05D002763 4.7e-111 405.6 328 66.8
Lj2g0000215 Lotus japonicus HOM05D002590 ORTHO05D002763 1.2e-109 401.0 329 63.8
Ca_13471_v3 Cicer arietinum L. HOM05D002590 ORTHO05D002763 8.6e-105 384.8 329 62.3
Medtr5g030890 Medicago truncatula HOM05D002590 ORTHO05D002763 8.6e-105 384.8 335 60.6
TPR.G37027 Trifolium pratense HOM05D002590 ORTHO05D002763 6.8e-102 375.2 303 64.0
Psat2g134480 Pisum sativum HOM05D002590 ORTHO05D002763 2.0e-101 373.6 314 62.1
Lalb_Chr16g0381481 Lupinus albus HOM05D002590 ORTHO05D002763 1.3e-97 360.9 311 64.0
VMungo1215G2859 Vigna mungo HOM05D002590 ORTHO05D002763 1.0e-94 351.3 331 58.3
Phvul.002G143100 Phaseolus vulgaris HOM05D002590 ORTHO05D002763 1.9e-91 340.5 310 58.4
QL06p037430 Quercus lobata HOM05D002590 ORTHO05D002763 7.5e-77 292.0 356 48.6
Sabra15G0049300 Salix brachista HOM05D002590 ORTHO05D002763 6.0e-74 282.3 333 49.8
TAR381G1305 Trochodendron aralioides HOM05D002590 ORTHO05D002763 6.0e-74 282.3 336 47.6
TAR381G1618 Trochodendron aralioides HOM05D002590 ORTHO05D002763 1.3e-73 281.2 333 47.7
Hma1.2p1_0080F.1_g042110 Hydrangea macrophylla HOM05D002590 ORTHO05D002763 1.4e-70 271.2 334 47.9
CiPaw.08G145500 Carya illinoinensis HOM05D002590 ORTHO05D002763 3.1e-70 270.0 441 42.6
Dinv36977 Davidia involucrata HOM05D002590 ORTHO05D002763 3.1e-70 270.0 361 43.8
TWI74G1198 Tripterygium wilfordii HOM05D002590 ORTHO05D002763 5.8e-69 265.8 335 45.4
CSS0030408 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 2.2e-68 263.8 339 46.0
TAR376G0018 Trochodendron aralioides HOM05D002590 ORTHO05D002763 2.9e-68 263.5 335 44.2
Atru.chr3.1168 Acer truncatum HOM05D002590 ORTHO05D002763 3.8e-68 263.1 334 41.9
Cpa.g.sc755.1 Carica papaya HOM05D002590 ORTHO05D002763 6.4e-68 262.3 335 45.1
Ciclev10024875m.g Citrus clementina HOM05D002590 ORTHO05D002763 6.4e-68 262.3 333 45.0
Manes.13G104100 Manihot esculenta HOM05D002590 ORTHO05D002763 6.4e-68 262.3 334 45.8
CiPaw.07G042400 Carya illinoinensis HOM05D002590 ORTHO05D002763 1.1e-67 261.5 327 45.3
Haze_03932 Corylus avellana HOM05D002590 ORTHO05D002763 1.1e-67 261.5 354 46.9
Atru.chr3.1151 Acer truncatum HOM05D002590 ORTHO05D002763 1.4e-67 261.2 334 41.6
Cc07_g07850 Coffea canephora HOM05D002590 ORTHO05D002763 4.6e-66 256.1 336 43.2
Prupe.6G209600 Prunus persica HOM05D002590 ORTHO05D002763 4.6e-66 256.1 333 45.9
GSVIVG01006770001 Vitis vinifera HOM05D002590 ORTHO05D002763 2.3e-65 253.8 274 48.9
Potri.015G042800 Populus trichocarpa HOM05D002590 ORTHO05D002763 8.7e-65 251.9 334 44.0
Dinv44885 Davidia involucrata HOM05D002590 ORTHO05D002763 2.8e-63 246.9 269 49.1
MD01G1044900 Malus domestica HOM05D002590 ORTHO05D002763 2.8e-63 246.9 330 45.8
Haze_22502 Corylus avellana HOM05D002590 ORTHO05D002763 4.7e-63 246.1 325 43.7
Sabra15G0042600 Salix brachista HOM05D002590 ORTHO05D002763 6.2e-63 245.7 330 44.5
Thecc.01G083700 Theobroma cacao HOM05D002590 ORTHO05D002763 1.4e-62 244.6 334 44.6
Gohir.D03G034500 Gossypium hirsutum HOM05D002590 ORTHO05D002763 9.0e-62 241.9 333 44.1
Gorai.003G036200 Gossypium raimondii HOM05D002590 ORTHO05D002763 3.4e-61 240.0 331 43.8
CAN.G215.6 Capsicum annuum HOM05D002590 ORTHO05D002763 9.9e-61 238.4 337 40.7
Duzib187G0808 Durio zibethinus HOM05D002590 ORTHO05D002763 1.3e-60 238.0 345 43.8
Manes.12G121200 Manihot esculenta HOM05D002590 ORTHO05D002763 1.3e-60 238.0 329 42.2
Sopen02g014540 Solanum pennellii HOM05D002590 ORTHO05D002763 2.2e-60 237.3 361 40.7
vmacro05519 Vaccinium macrocarpon HOM05D002590 ORTHO05D002763 2.2e-60 237.3 342 43.0
BcaB06g27814 Brassica carinata HOM05D002590 ORTHO05D002763 4.9e-60 236.1 333 43.2
Gohir.A02G146100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 4.9e-60 236.1 333 43.5
A04p17130 Brassica napus HOM05D002590 ORTHO05D002763 1.1e-59 235.0 338 42.3
Hund16613 Selenicereus undatus HOM05D002590 ORTHO05D002763 1.1e-59 235.0 331 43.2
Aqoxy6G00635 Aquilegia oxysepala HOM05D002590 ORTHO05D002763 1.9e-59 234.2 331 42.6
PGSC0003DMG400010387 Solanum tuberosum HOM05D002590 ORTHO05D002763 2.4e-59 233.8 338 42.0
MBI16_g44750_MAGBIO Magnolia biondii HOM05D002590 ORTHO05D002763 3.2e-59 233.4 327 41.6
CANSAT01G0583 Cannabis sativa HOM05D002590 ORTHO05D002763 7.1e-59 232.3 370 41.9
Nn5g29774 Nelumbo nucifera HOM05D002590 ORTHO05D002763 1.2e-58 231.5 327 43.7
Lj4C175G12 Lonicera japonica HOM05D002590 ORTHO05D002763 1.6e-58 231.1 376 38.6
ECA232G2374 Erigeron canadensis HOM05D002590 ORTHO05D002763 2.7e-58 230.3 256 50.4
BcaC02g08627 Brassica carinata HOM05D002590 ORTHO05D002763 4.6e-58 229.6 339 42.8
BolC4t26766H Brassica oleracea HOM05D002590 ORTHO05D002763 6.0e-58 229.2 339 42.8
FAN28G1499 Fragaria x ananassa HOM05D002590 ORTHO05D002763 7.8e-58 228.8 327 44.6
Eucgr.I00602 Eucalyptus grandis HOM05D002590 ORTHO05D002763 1.3e-57 228.0 362 40.1
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.3e-57 228.0 328 43.9
Sopen02g036260 Solanum pennellii HOM05D002590 ORTHO05D002763 1.3e-57 228.0 272 43.8
SalBow3G3065 Salvia bowleyana HOM05D002590 ORTHO05D002763 1.7e-57 227.6 292 44.2
CSS0035578 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 2.3e-57 227.3 298 44.3
Cfa013829 Carpinus fangiana HOM05D002590 ORTHO05D002763 2.3e-57 227.3 325 41.5
FAN19G1400 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.3e-57 227.3 327 44.6
PSO210G0325 Papaver somniferum HOM05D002590 ORTHO05D002763 2.3e-57 227.3 341 39.6
C04p51940 Brassica napus HOM05D002590 ORTHO05D002763 3.0e-57 226.9 339 42.5
FvH4_1g18970 Fragaria vesca HOM05D002590 ORTHO05D002763 3.9e-57 226.5 327 44.6
Solyc02g063450.4 Solanum lycopersicum HOM05D002590 ORTHO05D002763 3.9e-57 226.5 324 41.7
Peaxi162Scf00943g00417 Petunia axillaris HOM05D002590 ORTHO05D002763 5.1e-57 226.1 269 43.9
RcHm_v2.0_Chr2g0109991 Rosa chinensis HOM05D002590 ORTHO05D002763 5.1e-57 226.1 327 41.9
Sed0010498 Sechium edule HOM05D002590 ORTHO05D002763 5.1e-57 226.1 269 46.1
Nitab4.5_0002713g0020 Nicotiana tabacum HOM05D002590 ORTHO05D002763 6.6e-57 225.7 346 39.6
COL.COLO4_11678 Corchorus olitorius HOM05D002590 ORTHO05D002763 1.1e-56 224.9 272 45.6
Nitab4.5_0000291g0070 Nicotiana tabacum HOM05D002590 ORTHO05D002763 1.1e-56 224.9 272 42.3
Solyc02g091650.4 Solanum lycopersicum HOM05D002590 ORTHO05D002763 1.1e-56 224.9 272 42.6
Aa31LG7G14160 Aethionema arabicum HOM05D002590 ORTHO05D002763 1.5e-56 224.6 326 42.0
SalBow3G1385 Salvia bowleyana HOM05D002590 ORTHO05D002763 1.5e-56 224.6 292 43.8
PSO210G6445 Papaver somniferum HOM05D002590 ORTHO05D002763 1.9e-56 224.2 343 39.4
CsaV3_3G003000 Cucumis sativus L. HOM05D002590 ORTHO05D002763 2.5e-56 223.8 364 39.6
Nitab4.5_0002135g0020 Nicotiana tabacum HOM05D002590 ORTHO05D002763 2.5e-56 223.8 272 42.3
QL12p039990 Quercus lobata HOM05D002590 ORTHO05D002763 2.5e-56 223.8 353 39.1
BraA04t17342Z Brassica rapa HOM05D002590 ORTHO05D002763 5.6e-56 222.6 340 42.1
Sp4g01683 Schrenkiella parvula HOM05D002590 ORTHO05D002763 5.6e-56 222.6 338 41.1
AT2G22660 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 7.3e-56 222.2 334 41.9
MSTRG.3507 Avicennia marina HOM05D002590 ORTHO05D002763 1.3e-55 221.5 323 41.5
Migut.H00293 Erythranthe guttata HOM05D002590 ORTHO05D002763 2.1e-55 220.7 329 42.6
CiPaw.07G161800 Carya illinoinensis HOM05D002590 ORTHO05D002763 3.6e-55 219.9 263 44.9
PGSC0003DMG400030615 Solanum tuberosum HOM05D002590 ORTHO05D002763 4.8e-55 219.5 272 43.0
AL4G12200 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 8.1e-55 218.8 334 40.7
SGA_v2.0_scaffold149G36515 Striga asiatica HOM05D002590 ORTHO05D002763 1.1e-54 218.4 337 41.5
CAN.G1061.26 Capsicum annuum HOM05D002590 ORTHO05D002763 1.4e-54 218.0 329 38.3
Migut.L00448 Erythranthe guttata HOM05D002590 ORTHO05D002763 1.4e-54 218.0 332 42.5
Nitab4.5_0000036g0420 Nicotiana tabacum HOM05D002590 ORTHO05D002763 1.4e-54 218.0 345 39.7
Rhsim04G0250100 Rhododendron simsii HOM05D002590 ORTHO05D002763 1.4e-54 218.0 393 39.7
Rhsim07G0172500 Rhododendron simsii HOM05D002590 ORTHO05D002763 1.4e-54 218.0 393 39.7
Sp7g35540 Schrenkiella parvula HOM05D002590 ORTHO05D002763 1.8e-54 217.6 315 42.2
MELO3C013963.2 Cucumis melo HOM05D002590 ORTHO05D002763 3.1e-54 216.9 353 39.9
AT4G37900 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 4.0e-54 216.5 326 41.4
Carub.0004s0181 Capsella rubella HOM05D002590 ORTHO05D002763 9.0e-54 215.3 334 41.0
CARHR113920 Cardamine hirsuta HOM05D002590 ORTHO05D002763 2.6e-53 213.8 329 42.2
Aa31LG6G14820 Aethionema arabicum HOM05D002590 ORTHO05D002763 4.5e-53 213.0 325 42.5
Aa31LG7G14140 Aethionema arabicum HOM05D002590 ORTHO05D002763 4.5e-53 213.0 322 41.6
AL7G12750 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 4.5e-53 213.0 325 40.0
Carub.0007s0232 Capsella rubella HOM05D002590 ORTHO05D002763 7.6e-53 212.2 339 41.0
Thhalv10000046m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 7.6e-53 212.2 318 40.9
Thhalv10024448m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 4.9e-52 209.5 330 39.4
FAN26G3252 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.9e-52 209.5 327 43.1
Actinidia11925 Actinidia chinensis HOM05D002590 ORTHO05D002763 1.9e-51 207.6 359 40.1
ClCG00G003360 Citrullus lanatus HOM05D002590 ORTHO05D002763 2.4e-51 207.2 352 40.3
ClCG10G002950 Citrullus lanatus HOM05D002590 ORTHO05D002763 2.4e-51 207.2 352 40.3
TWI56G0280 Tripterygium wilfordii HOM05D002590 ORTHO05D002763 1.2e-50 204.9 220 48.6
A08p22920 Brassica napus HOM05D002590 ORTHO05D002763 2.7e-50 203.8 317 42.3
Sc03g0000580 Simmondsia chinensis HOM05D002590 ORTHO05D002763 7.9e-50 202.2 230 47.0
THA.LOC104807659 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 3.9e-49 199.9 332 39.8
HanXRQChr09g0262881 Helianthus annuus HOM05D002590 ORTHO05D002763 6.7e-49 199.1 242 44.6
Ah.02g129220 Amaranthus hybridus HOM05D002590 ORTHO05D002763 1.1e-48 198.4 255 43.5
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.1e-48 198.4 261 44.4
BraA08t34254Z Brassica rapa HOM05D002590 ORTHO05D002763 1.5e-48 198.0 317 40.7
CARHR246310 Cardamine hirsuta HOM05D002590 ORTHO05D002763 1.9e-48 197.6 320 41.2
PGR031G2118 Punica granatum HOM05D002590 ORTHO05D002763 3.3e-48 196.8 314 37.9
Manes.05G187500 Manihot esculenta HOM05D002590 ORTHO05D002763 5.6e-48 196.1 339 37.5
THA.LOC104804185 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 7.4e-48 195.7 321 40.5
EL10Ac6g13303 Beta vulgaris HOM05D002590 ORTHO05D002763 1.3e-47 194.9 336 39.6
BcaB03g12326 Brassica carinata HOM05D002590 ORTHO05D002763 1.6e-47 194.5 339 38.3
FAN18G3860 Fragaria x ananassa HOM05D002590 ORTHO05D002763 3.7e-47 193.4 267 40.1
HPP92_013293 Vanilla planifolia HOM05D002590 ORTHO05D002763 3.7e-47 193.4 298 39.3
Atru.chr13.944 Acer truncatum HOM05D002590 ORTHO05D002763 4.8e-47 193.0 328 39.3
AUR62032878 Chenopodium quinoa HOM05D002590 ORTHO05D002763 1.8e-46 191.0 324 39.2
FAN08G1103 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.0e-46 189.9 267 39.7
Potri.002G108900 Populus trichocarpa HOM05D002590 ORTHO05D002763 5.3e-46 189.5 302 39.7
ECA238G1257 Erigeron canadensis HOM05D002590 ORTHO05D002763 1.5e-45 188.0 326 37.4
FvH4_5g33890 Fragaria vesca HOM05D002590 ORTHO05D002763 1.5e-45 188.0 267 39.7
C03p78950 Brassica napus HOM05D002590 ORTHO05D002763 2.0e-45 187.6 333 39.3
BcaC01g00368 Brassica carinata HOM05D002590 ORTHO05D002763 2.6e-45 187.2 333 39.3
BolC3t20138H Brassica oleracea HOM05D002590 ORTHO05D002763 2.6e-45 187.2 333 39.3
SalBow3G1036 Salvia bowleyana HOM05D002590 ORTHO05D002763 7.6e-45 185.7 241 42.7
Glyma.02G217400 Glycine max HOM05D002590 ORTHO05D002763 9.9e-45 185.3 244 45.1
Sabra15G0043900 Salix brachista HOM05D002590 ORTHO05D002763 9.9e-45 185.3 341 36.1
BcaNung03410 Brassica carinata HOM05D002590 ORTHO05D002763 3.8e-44 183.3 314 40.1
BolC7t46687H Brassica oleracea HOM05D002590 ORTHO05D002763 3.8e-44 183.3 314 40.1
LjContig00408g0014186 Lotus japonicus HOM05D002590 ORTHO05D002763 4.9e-44 183.0 251 42.6
HanXRQChr14g0447071 Helianthus annuus HOM05D002590 ORTHO05D002763 8.4e-44 182.2 253 43.1
Actinidia19606 Actinidia chinensis HOM05D002590 ORTHO05D002763 1.4e-43 181.4 251 41.4
C07p62730 Brassica napus HOM05D002590 ORTHO05D002763 1.9e-43 181.0 313 39.6
A03p65710 Brassica napus HOM05D002590 ORTHO05D002763 7.1e-43 179.1 300 38.3
BraA03t15621Z Brassica rapa HOM05D002590 ORTHO05D002763 7.1e-43 179.1 300 38.3
CARHR246300 Cardamine hirsuta HOM05D002590 ORTHO05D002763 4.6e-42 176.4 281 39.1
arahy.Tifrunner.gnm1.ann1.F9GNLP Arachis hypogaea HOM05D002590 ORTHO05D002763 1.8e-41 174.5 242 42.1
Eucgr.F02168 Eucalyptus grandis HOM05D002590 ORTHO05D002763 3.3e-40 170.2 347 34.9
VMungo0647G0151 Vigna mungo HOM05D002590 ORTHO05D002763 9.6e-40 168.7 242 41.7
Lsat_1_v5_gn_4_158180 Lactuca sativa HOM05D002590 ORTHO05D002763 8.2e-39 165.6 241 40.2
ATR0800G118 Amborella trichopoda HOM05D002590 ORTHO05D002763 4.0e-38 163.3 339 35.4
Phvul.008G184500 Phaseolus vulgaris HOM05D002590 ORTHO05D002763 6.9e-38 162.5 243 41.2
AUR62019077 Chenopodium quinoa HOM05D002590 ORTHO05D002763 8.4e-36 155.6 320 34.4
arahy.Tifrunner.gnm1.ann1.U2GM3Q Arachis hypogaea HOM05D002590 ORTHO05D002763 3.2e-35 153.7 279 35.5
AUR62014334 Chenopodium quinoa HOM05D002590 ORTHO05D002763 7.1e-35 152.5 245 36.3
Duzib093G1484 Durio zibethinus HOM05D002590 ORTHO05D002763 1.6e-34 151.4 252 40.1
Gorai.010G085100 Gossypium raimondii HOM05D002590 ORTHO05D002763 3.9e-33 146.7 314 36.0
EL10Ac1g00686 Beta vulgaris HOM05D002590 ORTHO05D002763 1.5e-32 144.8 250 35.2
Gohir.A06G074100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 3.3e-32 143.7 314 35.7
Hund17247 Selenicereus undatus HOM05D002590 ORTHO05D002763 2.8e-31 140.6 253 36.4
Zm00001eb166550 Zea mays HOM05D002590 ORTHO05D002763 6.3e-31 139.4 335 31.9
Os11g0621300 Oryza sativa ssp. japonica HOM05D002590 ORTHO05D002763 5.9e-29 132.9 333 31.2
CDE04G0086 Ceratophyllum demersum HOM05D002590 ORTHO05D002763 6.5e-28 129.4 256 34.4
Peaxi162Scf00703g00231 Petunia axillaris HOM05D002590 ORTHO05D002763 7.9e-26 122.5 221 35.7
FAN21G1961 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.0e-25 122.1 257 35.0
Actinidia36377 Actinidia chinensis HOM05D002590 ORTHO05D002763 2.2e-23 114.4 128 47.7
Actinidia04117 Actinidia chinensis HOM05D002590 ORTHO05D012270 4.2e-19 100.1 116 47.4
FAN04G1356 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.8e-17 94.7 93 47.3
CSS0020341 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 8.8e-17 92.4 148 39.9
FAN25G1500 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.4e-16 90.1 113 46.0
Prupe.1G539900 Prunus persica HOM05D002590 ORTHO05D002763 1.3e-15 88.6 116 44.0
Sabra02G0085700 Salix brachista HOM05D002590 ORTHO05D002763 5.3e-14 83.2 209 33.5
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.0e-13 81.3 108 43.5
ECA232G1811 Erigeron canadensis HOM05D002590 ORTHO05D002763 3.8e-12 77.0 117 40.2
SEGI_10955 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 4.2e-11 73.6 365 26.6
MD08G1208800 Malus domestica HOM05D002590 ORTHO05D002763 1.8e-09 68.2 70 47.1
RcHm_v2.0_Chr7g0233251 Rosa chinensis HOM05D002590 ORTHO05D002763 3.7e-07 60.5 78 39.7


User provided reference genes

Program Settings