Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 0.0e+00 1201.8 612 100.0
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 0.0e+00 1164.4 610 97.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 3.9e-191 672.2 642 58.4
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 6.8e-188 661.4 602 58.6
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.1e-185 652.1 627 58.2
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 5.2e-180 635.2 641 56.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.9e-177 626.7 609 56.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.8e-173 612.8 702 51.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.0e-164 582.4 456 65.6
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.7e-162 577.0 626 52.1
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.1e-161 574.3 591 54.5
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 8.7e-159 564.7 587 53.3
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.6e-155 553.1 622 49.0
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.3e-151 540.8 609 50.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.2e-145 519.6 602 48.3
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.5e-142 510.8 739 43.3
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 8.2e-141 505.0 592 47.8
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 3.4e-139 499.6 640 44.8
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 3.9e-135 486.1 823 38.4
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 8.2e-133 478.4 611 45.0
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.8e-132 477.2 580 48.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 8.5e-130 468.4 702 40.5
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.6e-126 456.8 614 44.0
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 5.7e-126 455.7 667 42.3
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 7.7e-123 445.3 635 42.5
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.9e-122 443.4 692 40.3
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.9e-122 443.4 624 44.2
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 2.7e-120 436.8 642 41.1
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.5e-118 431.0 644 42.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 8.2e-117 425.2 686 38.9
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-116 424.9 722 38.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.4e-116 423.7 724 38.5
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.0e-115 420.6 618 40.5
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 3.2e-113 413.3 704 38.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 4.2e-113 412.9 646 41.6
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.5e-113 412.5 625 41.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.8e-111 407.5 614 41.9
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.5e-110 404.4 628 40.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.6e-110 403.7 642 38.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-109 401.0 624 40.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 5.5e-105 386.0 677 38.0
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 9.5e-105 385.2 634 39.6
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.6e-104 384.4 701 36.9
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.4e-103 381.3 654 37.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 8.9e-103 378.6 626 38.5
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 2.0e-102 377.5 644 38.4
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 4.9e-101 372.9 470 43.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.8e-100 370.9 627 38.3
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 3.1e-100 370.2 707 35.8
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.7e-98 364.4 688 37.5
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 5.0e-98 362.8 365 55.1
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 8.6e-98 362.1 385 52.7
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 8.6e-98 362.1 626 38.0
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.2e-96 358.2 605 37.4
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.8e-96 357.1 704 36.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.6e-96 356.7 647 37.2
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.0e-94 350.9 556 39.4
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.2e-93 347.4 803 31.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.1e-92 345.1 702 33.8
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-92 344.7 319 54.2
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 5.4e-92 342.8 385 49.9
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 4.6e-91 339.7 279 62.7
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.3e-90 337.4 327 52.6
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.5e-89 334.7 762 33.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.5e-89 334.0 366 53.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 8.0e-88 328.9 273 59.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.2e-86 325.1 800 30.9
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.3e-85 321.6 445 42.0
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 3.2e-84 317.0 666 33.9
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.6e-83 313.2 307 52.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 3.0e-82 310.5 370 48.6
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.6e-82 309.3 312 50.6
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.1e-80 304.3 312 50.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 3.1e-79 300.4 629 33.9
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.1e-79 300.4 739 32.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.4e-77 292.7 358 45.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 8.3e-77 292.4 641 32.6
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.4e-76 291.6 320 48.1
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.9e-76 291.2 616 34.4
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.1e-76 290.0 305 48.5
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.4e-76 289.7 617 34.2
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.6e-75 288.1 311 47.9
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.0e-74 285.4 618 33.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.3e-74 285.0 662 31.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.3e-74 285.0 635 33.2
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.3e-74 284.3 742 31.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 3.0e-74 283.9 337 46.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.1e-73 282.0 614 33.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.5e-73 281.6 748 30.2
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 3.3e-73 280.4 636 32.4
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.2e-72 278.5 615 34.1
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 4.7e-72 276.6 614 34.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 6.8e-71 272.7 615 35.4
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.5e-70 271.6 342 44.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 7.6e-70 269.2 610 33.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.3e-69 268.5 622 34.4
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 2.2e-69 267.7 727 31.4
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 4.9e-69 266.5 364 41.2
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 6.4e-69 266.2 295 55.6
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 2.4e-68 264.2 755 29.8
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.2e-68 263.8 631 31.2
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 3.5e-67 260.4 423 37.6
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 4.6e-67 260.0 336 43.2
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 6.0e-67 259.6 642 32.2
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 3.0e-66 257.3 644 31.1
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.9e-66 256.9 436 37.6
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.9e-65 254.6 463 37.6
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.6e-65 253.1 615 32.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.8e-64 250.8 224 54.5
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.6e-64 250.4 267 50.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.8e-63 248.1 587 33.6
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.2e-63 246.5 600 30.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 9.0e-63 245.7 670 30.3
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.5e-62 245.0 314 44.3
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.9e-60 238.0 550 31.6
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 4.2e-60 236.9 433 38.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.7e-58 229.2 707 28.9
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 9.6e-57 225.7 234 50.0
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.1e-56 224.6 557 30.9
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.2e-52 210.3 307 39.4
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.3e-50 204.5 269 43.5
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.3e-50 204.5 629 28.9
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 7.4e-49 199.5 616 31.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.1e-44 185.7 311 37.0
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.3e-37 162.2 188 46.3
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.3e-37 162.2 188 46.3
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 4.9e-37 160.2 710 25.9
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.1e-35 154.8 183 44.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 3.3e-33 147.5 122 59.0
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.1e-31 142.5 229 38.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 5.3e-31 140.2 550 28.0
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 5.9e-30 136.7 163 41.7
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 6.3e-24 116.7 222 34.2
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 4.5e-22 110.5 246 34.1
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 3.8e-21 107.5 114 50.9
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 3.8e-21 107.5 121 45.5
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 8.5e-21 106.3 154 40.3
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.7e-19 101.3 262 32.4
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.5e-17 95.5 77 62.3
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.1e-15 87.8 123 43.1
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.0e-15 86.7 141 41.8
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 9.1e-15 86.3 143 39.2
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 3.5e-14 84.3 143 38.5
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 4.5e-14 84.0 143 37.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.7e-13 82.0 143 37.1
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.7e-13 82.0 147 35.4
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 1.6e-11 75.5 154 35.1
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.4e-10 72.4 164 32.3
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 3.1e-07 61.2 67 50.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.0e-07 60.1 86 40.7
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 7.7e-06 56.6 133 34.6


User provided reference genes

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