Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GV4PGB Arachis hypogaea HOM05D040128 ORTHO05D087538 8.7e-144 513.8 302 100.0
arahy.Tifrunner.gnm1.ann1.KN80ED Arachis hypogaea HOM05D040128 ORTHO05D086778 8.7e-144 513.8 302 100.0
arahy.Tifrunner.gnm1.ann1.P5DPDC Arachis hypogaea HOM05D040128 ORTHO05D008091 2.3e-35 153.7 191 63.4
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.7e-17 93.2 86 64.0
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-15 88.2 52 86.5
arahy.Tifrunner.gnm1.ann1.EB8GYD Arachis hypogaea HOM05D001091 ORTHO05D001020 2.6e-15 87.0 51 86.3
TPR.G21598 Trifolium pratense HOM05D001091 ORTHO05D001020 5.5e-13 79.3 48 79.2
Ca_09954_v3 Cicer arietinum L. HOM05D001091 ORTHO05D001020 1.6e-12 77.8 55 67.3
Medtr1g077980 Medicago truncatula HOM05D001091 ORTHO05D001020 1.6e-12 77.8 55 67.3
Psat6g052920 Pisum sativum HOM05D001091 ORTHO05D001020 2.7e-12 77.0 48 77.1
Lalb_Chr02g0149551 Lupinus albus HOM05D001091 ORTHO05D001020 1.0e-11 75.1 55 65.5
Lalb_Chr06g0168601 Lupinus albus HOM05D001091 ORTHO05D001020 1.3e-11 74.7 55 67.3
Lj5g0007851 Lotus japonicus HOM05D001091 ORTHO05D001020 3.9e-11 73.2 51 70.6
VMungo0720G2397 Vigna mungo HOM05D001091 ORTHO05D001020 3.9e-11 73.2 51 72.5
Phvul.L004601 Phaseolus vulgaris HOM05D001091 ORTHO05D001020 5.1e-11 72.8 51 72.5
Glyma.20G217800 Glycine max HOM05D001091 ORTHO05D001020 8.7e-11 72.0 51 70.6
Glyma.10G172400 Glycine max HOM05D001091 ORTHO05D001020 1.1e-10 71.6 51 70.6
CSS0039255 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 9.7e-10 68.6 55 58.2
vmacro13839 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 2.2e-09 67.4 48 64.6
CSS0017092 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 3.7e-09 66.6 48 64.6
CSS0026206 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 3.7e-09 66.6 48 64.6
PSO063G1798 Papaver somniferum HOM05D001091 ORTHO05D001020 4.8e-09 66.2 48 64.6
PSO782G3112 Papaver somniferum HOM05D001091 ORTHO05D001020 4.8e-09 66.2 48 64.6
vmacro11493 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 4.8e-09 66.2 52 61.5
Rhsim07G0076400 Rhododendron simsii HOM05D001091 ORTHO05D001020 6.3e-09 65.9 50 62.0
AL1G47120 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 8.2e-09 65.5 51 60.8
Cpa.g.sc37.94 Carica papaya HOM05D001091 ORTHO05D001020 8.2e-09 65.5 52 61.5
CANSAT21G1175 Cannabis sativa HOM05D001091 ORTHO05D001020 1.1e-08 65.1 48 66.7
Thhalv10006750m.g Eutrema salsugineum HOM05D001091 ORTHO05D001020 1.1e-08 65.1 55 52.7
CiPaw.11G110400 Carya illinoinensis HOM05D001091 ORTHO05D001020 1.8e-08 64.3 51 60.8
AUR62007076 Chenopodium quinoa HOM05D001091 ORTHO05D001020 1.8e-08 64.3 48 62.5
AUR62019940 Chenopodium quinoa HOM05D001091 ORTHO05D001020 1.8e-08 64.3 48 62.5
GSVIVG01019677001 Vitis vinifera HOM05D001091 ORTHO05D001020 1.8e-08 64.3 51 56.9
Aa31LG6G7480 Aethionema arabicum HOM05D001091 ORTHO05D001020 2.4e-08 63.9 55 52.7
Potri.011G152500 Populus trichocarpa HOM05D001091 ORTHO05D001020 2.4e-08 63.9 49 63.3
EL10Ac5g12401 Beta vulgaris HOM05D001091 ORTHO05D001020 3.1e-08 63.5 51 58.8
Sabra11G0148300 Salix brachista HOM05D001091 ORTHO05D001020 3.1e-08 63.5 49 63.3
SalBow6G2252 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.1e-08 63.5 55 54.5
SalBow6G7235 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.1e-08 63.5 55 54.5
BcaB01g01490 Brassica carinata HOM05D001091 ORTHO05D001020 4.1e-08 63.2 51 56.9
CsaV3_5G001580 Cucumis sativus L. HOM05D001091 ORTHO05D001020 5.3e-08 62.8 51 60.8
Hund11338 Selenicereus undatus HOM05D001091 ORTHO05D001020 5.3e-08 62.8 51 54.9
MSTRG.24869 Avicennia marina HOM05D001091 ORTHO05D001020 6.9e-08 62.4 56 53.6
BcaC05g27312 Brassica carinata HOM05D001091 ORTHO05D001020 6.9e-08 62.4 51 58.8
A09p33500 Brassica napus HOM05D001091 ORTHO05D001020 6.9e-08 62.4 51 58.8
C05p32320 Brassica napus HOM05D001091 ORTHO05D001020 6.9e-08 62.4 51 58.8
BolC5t31964H Brassica oleracea HOM05D001091 ORTHO05D001020 6.9e-08 62.4 51 58.8
BraA09t38892Z Brassica rapa HOM05D001091 ORTHO05D001020 6.9e-08 62.4 51 58.8
Potri.001G449000 Populus trichocarpa HOM05D001091 ORTHO05D001020 6.9e-08 62.4 56 53.6
Prupe.5G132600 Prunus persica HOM05D001091 ORTHO05D001020 6.9e-08 62.4 55 52.7
MELO3C005793.2 Cucumis melo HOM05D001091 ORTHO05D001020 9.0e-08 62.0 62 53.2
Manes.02G001100 Manihot esculenta HOM05D001091 ORTHO05D001020 9.0e-08 62.0 57 54.4
Sabra12G0075000 Salix brachista HOM05D001091 ORTHO05D001020 1.2e-07 61.6 56 53.6
Sabra16G0303000 Salix brachista HOM05D005424 ORTHO05D006726 1.2e-07 61.6 56 53.6
TAR629G2137 Trochodendron aralioides HOM05D001091 ORTHO05D001020 1.2e-07 61.6 51 56.9
ClCG01G001440 Citrullus lanatus HOM05D001091 ORTHO05D001020 1.5e-07 61.2 48 62.5
COL.COLO4_10823 Corchorus olitorius HOM05D001091 ORTHO05D001020 1.5e-07 61.2 51 56.9
Gohir.D12G242700 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.5e-07 61.2 48 58.3
Gorai.008G259900 Gossypium raimondii HOM05D001091 ORTHO05D001020 1.5e-07 61.2 48 58.3
MD06G1121900 Malus domestica HOM05D001091 ORTHO05D001020 1.5e-07 61.2 55 52.7
Sp1g28150 Schrenkiella parvula HOM05D001091 ORTHO05D001020 1.5e-07 61.2 51 56.9
TAR636G1107 Trochodendron aralioides HOM05D001091 ORTHO05D001020 1.5e-07 61.2 51 52.9
CARHR032190 Cardamine hirsuta HOM05D001091 ORTHO05D001020 2.0e-07 60.8 55 50.9
Cfa011901 Carpinus fangiana HOM05D001091 ORTHO05D001020 2.0e-07 60.8 56 58.9
Gohir.A12G241400 Gossypium hirsutum HOM05D001091 ORTHO05D001020 2.0e-07 60.8 48 58.3
MD14G1138300 Malus domestica HOM05D001091 ORTHO05D001020 2.0e-07 60.8 55 50.9
Manes.01G056100 Manihot esculenta HOM05D001091 ORTHO05D001020 2.0e-07 60.8 49 61.2
Oeu042853.1 Olea europaea HOM05D001091 ORTHO05D001020 2.0e-07 60.8 49 61.2
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.6e-07 60.5 56 51.8
SGA_v2.0_scaffold36G14269 Striga asiatica HOM05D001091 ORTHO05D001020 2.6e-07 60.5 51 58.8
Aa31LG9G11410 Aethionema arabicum HOM05D001091 ORTHO05D001020 3.4e-07 60.1 51 52.9
Migut.E00726 Erythranthe guttata HOM05D001091 ORTHO05D001020 3.4e-07 60.1 48 60.4
Hma1.2p1_0198F.1_g085200 Hydrangea macrophylla HOM05D001091 ORTHO05D001020 3.4e-07 60.1 48 62.5
RcHm_v2.0_Chr7g0187531 Rosa chinensis HOM05D001091 ORTHO05D001020 3.4e-07 60.1 55 49.1
THA.LOC104813064 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 3.4e-07 60.1 48 60.4
Aqoxy7G00006 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 4.5e-07 59.7 51 54.9
Haze_09197 Corylus avellana HOM05D001091 ORTHO05D001020 4.5e-07 59.7 56 57.1
Sed0004228 Sechium edule HOM05D001091 ORTHO05D001020 4.5e-07 59.7 51 58.8
THA.LOC104815366 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.5e-07 59.7 48 58.3
Ah.12g053330 Amaranthus hybridus HOM05D001091 ORTHO05D001020 5.9e-07 59.3 51 54.9
Eucgr.D01669 Eucalyptus grandis HOM05D001091 ORTHO05D001020 5.9e-07 59.3 48 58.3
Sed0024629 Sechium edule HOM05D001091 ORTHO05D001020 5.9e-07 59.3 51 60.8
C03p35090 Brassica napus HOM05D001091 ORTHO05D001020 7.7e-07 58.9 51 52.9
BolC3t15820H Brassica oleracea HOM05D001091 ORTHO05D001020 7.7e-07 58.9 51 52.9
Nn3g18864 Nelumbo nucifera HOM05D001091 ORTHO05D001020 7.7e-07 58.9 51 51.0
Sp6g06860 Schrenkiella parvula HOM05D001091 ORTHO05D001020 7.7e-07 58.9 51 51.0
DCAR_029901 Daucus carota HOM05D001091 ORTHO05D001020 1.0e-06 58.5 48 60.4
Duzib068G0645 Durio zibethinus HOM05D001091 ORTHO05D001020 1.0e-06 58.5 51 52.9
AT1G32850 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 1.3e-06 58.2 51 54.9
BcaC01g04671 Brassica carinata HOM05D001091 ORTHO05D001020 1.3e-06 58.2 51 52.9
Duzib205G0690 Durio zibethinus HOM05D001091 ORTHO05D001020 1.3e-06 58.2 59 49.2
Peaxi162Scf00074g00138 Petunia axillaris HOM05D001091 ORTHO05D001020 1.3e-06 58.2 48 62.5
BcaB01g02746 Brassica carinata HOM05D001091 ORTHO05D001020 1.7e-06 57.8 51 51.0
A03p29030 Brassica napus HOM05D001091 ORTHO05D001020 1.7e-06 57.8 51 51.0
BraA03t12099Z Brassica rapa HOM05D001091 ORTHO05D001020 1.7e-06 57.8 51 51.0
FAN04G0260 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.7e-06 57.8 51 52.9
FAN08G3483 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.7e-06 57.8 51 52.9
FAN13G1519 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.7e-06 57.8 51 52.9
Gohir.D09G182800 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.7e-06 57.8 56 51.8
Gorai.006G205100 Gossypium raimondii HOM05D001091 ORTHO05D001020 1.7e-06 57.8 56 51.8
QL02p027422 Quercus lobata HOM05D001091 ORTHO05D001020 1.7e-06 57.8 56 51.8
FvH4_5g10610 Fragaria vesca HOM05D001091 ORTHO05D001020 2.2e-06 57.4 51 52.9
FAN18G4434 Fragaria x ananassa HOM05D005424 ORTHO05D006726 2.2e-06 57.4 51 52.9
Nitab4.5_0002520g0110 Nicotiana tabacum HOM05D001091 ORTHO05D001020 2.2e-06 57.4 48 62.5
Sc01g0010810 Simmondsia chinensis HOM05D001091 ORTHO05D001020 2.2e-06 57.4 51 51.0
Thecc.03G218100 Theobroma cacao HOM05D001091 ORTHO05D001020 2.2e-06 57.4 59 47.5
TWI15G0774 Tripterygium wilfordii HOM05D001091 ORTHO05D001020 2.2e-06 57.4 48 62.5
A05p24520 Brassica napus HOM05D001091 ORTHO05D001020 2.9e-06 57.0 55 50.9
BraA05t21341Z Brassica rapa HOM05D001091 ORTHO05D001020 2.9e-06 57.0 55 50.9
Carub.0001s3114 Capsella rubella HOM05D001091 ORTHO05D001020 2.9e-06 57.0 51 51.0
HanXRQChr17g0534101 Helianthus annuus HOM05D001091 ORTHO05D001020 2.9e-06 57.0 48 60.4
Solyc08g083300.4 Solanum lycopersicum HOM05D001091 ORTHO05D001020 2.9e-06 57.0 48 64.6
Sopen08g031510 Solanum pennellii HOM05D001091 ORTHO05D001020 2.9e-06 57.0 48 64.6
SGA_v2.0_scaffold104G30251 Striga asiatica HOM05D001091 ORTHO05D001020 2.9e-06 57.0 48 58.3
Thhalv10028406m.g Eutrema salsugineum HOM05D001091 ORTHO05D001020 3.8e-06 56.6 51 49.0
Nitab4.5_0003419g0100 Nicotiana tabacum HOM05D001091 ORTHO05D001020 3.8e-06 56.6 48 62.5
CAN.G567.103 Capsicum annuum HOM05D001091 ORTHO05D001020 5.0e-06 56.2 48 62.5
Gohir.A09G188000 Gossypium hirsutum HOM05D001091 ORTHO05D001020 5.0e-06 56.2 48 54.2
unitig_8.g3580 Utricularia gibba HOM05D001091 ORTHO05D001020 5.0e-06 56.2 55 47.3
ATR0304G032 Amborella trichopoda HOM05D001091 ORTHO05D001020 6.5e-06 55.8 48 52.1
CiPaw.12G076100 Carya illinoinensis HOM05D001091 ORTHO05D001020 6.5e-06 55.8 52 57.7
Dinv12892 Davidia involucrata HOM05D001091 ORTHO05D001020 6.5e-06 55.8 48 58.3
AL6G44620 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 8.5e-06 55.5 51 51.0
BcaB03g13710 Brassica carinata HOM05D001091 ORTHO05D001020 8.5e-06 55.5 51 52.9


User provided reference genes

Program Settings