Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KMS93W Arachis hypogaea HOM05D002450 ORTHO05D086579 6.1e-295 1016.9 581 100.0
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 8.7e-225 783.9 601 81.0
arahy.Tifrunner.gnm1.ann1.EHU7KN Arachis hypogaea HOM05D002450 ORTHO05D086181 1.7e-135 487.3 400 68.5
arahy.Tifrunner.gnm1.ann1.R57CE7 Arachis hypogaea HOM05D002450 ORTHO05D083122 2.0e-104 384.0 306 70.3
arahy.Tifrunner.gnm1.ann1.LE2Y0H Arachis hypogaea HOM05D002450 ORTHO05D087723 5.1e-84 316.2 306 61.1
arahy.Tifrunner.gnm1.ann1.0T71ZQ Arachis hypogaea HOM05D002450 ORTHO05D082428 4.1e-81 306.6 306 60.1
arahy.Tifrunner.gnm1.ann1.05JDKE Arachis hypogaea HOM05D002450 ORTHO05D085574 1.0e-76 292.0 281 61.9
arahy.Tifrunner.gnm1.ann1.C3PHQW Arachis hypogaea HOM05D002450 ORTHO05D002953 6.3e-66 256.1 242 66.9
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 5.9e-64 249.6 150 88.0
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 1.7e-50 204.9 180 67.2
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 8.3e-42 176.0 181 59.1
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 1.2e-40 172.2 181 58.0
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.3e-39 168.7 180 56.1
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 2.9e-39 167.5 180 57.2
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 3.3e-38 164.1 181 58.0
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 1.4e-36 158.7 260 43.1
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 2.6e-35 154.5 180 55.0
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 4.4e-35 153.7 179 54.2
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 5.9e-32 143.3 180 52.2
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.7e-31 141.7 179 52.5
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 2.3e-31 141.4 179 51.4
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 9.5e-30 136.0 181 51.9
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 9.5e-30 136.0 179 48.6
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 4.7e-29 133.7 179 50.8
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 5.6e-22 110.2 179 43.0
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 1.1e-20 105.9 145 49.0
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 2.0e-19 101.7 184 40.8
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 5.8e-19 100.1 179 41.9
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.4e-17 95.5 184 41.8
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 3.2e-17 94.4 184 41.3
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 4.1e-17 94.0 184 39.1
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 1.2e-16 92.4 187 38.0
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 2.1e-16 91.7 186 38.7
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 2.7e-16 91.3 183 37.2
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 3.5e-16 90.9 183 37.7
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 7.8e-16 89.7 178 36.5
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 1.3e-15 89.0 166 36.7
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.7e-15 88.6 185 40.0
Atru.chr9.2194 Acer truncatum HOM05D002450 ORTHO05D002953 6.6e-15 86.7 181 36.5
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 1.5e-14 85.5 185 38.9
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 1.5e-14 85.5 166 37.3
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 1.9e-14 85.1 177 35.0
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 2.5e-14 84.7 187 36.4
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 4.3e-14 84.0 186 37.1
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 4.3e-14 84.0 185 38.9
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 5.6e-14 83.6 181 35.4
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 1.6e-13 82.0 177 34.5
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 2.1e-13 81.6 182 36.8
arahy.Tifrunner.gnm1.ann1.MZ30C9 Arachis hypogaea HOM05D002450 ORTHO05D085569 4.7e-13 80.5 79 58.2
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 1.1e-12 79.3 178 36.5
Medtr3g102910 Medicago truncatula HOM05D002450 ORTHO05D002953 4.0e-12 77.4 120 40.8
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 6.8e-12 76.6 179 34.1
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 2.0e-11 75.1 175 34.3
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 2.6e-11 74.7 176 31.8
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 3.4e-11 74.3 165 36.4
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 3.4e-11 74.3 179 34.6
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.4e-11 74.3 179 34.6
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 4.4e-11 73.9 188 35.1
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 5.8e-11 73.6 180 36.1
Medtr3g102950 Medicago truncatula HOM05D002450 ORTHO05D002953 7.6e-11 73.2 85 50.6
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 9.9e-11 72.8 179 33.5
arahy.Tifrunner.gnm1.ann1.B5A796 Arachis hypogaea HOM05D002450 ORTHO05D085697 1.3e-10 72.4 79 53.2
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 1.3e-10 72.4 177 33.3
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.7e-10 72.0 172 33.1
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 2.2e-10 71.6 182 34.6
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 2.9e-10 71.2 162 35.2
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 2.9e-10 71.2 156 35.3
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 4.9e-10 70.5 178 33.1
Psat4g077840 Pisum sativum HOM05D002450 ORTHO05D002953 1.4e-09 68.9 60 60.0
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 1.4e-09 68.9 60 58.3
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.2e-09 67.8 154 33.8
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 9.2e-09 66.2 141 36.9
Medtr3g102940 Medicago truncatula HOM05D002450 ORTHO05D002953 9.2e-09 66.2 67 55.2
Psat2g110520 Pisum sativum HOM05D002450 ORTHO05D002953 9.2e-09 66.2 60 56.7
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 2.1e-08 65.1 197 31.0
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 2.7e-08 64.7 75 46.7
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 2.7e-08 64.7 182 33.5
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 6.0e-08 63.5 184 32.1
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.0e-07 62.8 187 31.6
Psat5g239280 Pisum sativum HOM05D002450 ORTHO05D002953 1.7e-07 62.0 60 53.3
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 2.3e-07 61.6 140 34.3
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 1.1e-06 59.3 163 33.1
Sc05g0001410 Simmondsia chinensis HOM05D002450 ORTHO05D002953 1.1e-06 59.3 186 30.6
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.1e-06 59.3 166 30.7
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 1.9e-06 58.5 171 31.0
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 3.3e-06 57.8 144 33.3
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 7.3e-06 56.6 188 28.2


User provided reference genes

Program Settings