Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 5.2e-148 527.7 268 100.0
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 1.3e-143 513.1 268 97.8
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 9.2e-105 384.0 274 74.5
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 6.2e-101 371.3 281 70.5
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 3.4e-99 365.5 273 70.7
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 1.3e-98 363.6 272 68.0
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 6.4e-98 361.3 225 79.1
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 1.1e-97 360.5 221 79.2
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 1.2e-96 357.1 226 81.0
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 2.7e-96 355.9 223 78.5
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 7.8e-96 354.4 225 78.2
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.0e-95 354.0 231 76.2
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.3e-95 353.6 221 77.8
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 1.1e-92 344.0 223 75.8
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 1.5e-91 340.1 261 66.3
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 1.5e-91 340.1 249 69.9
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 2.6e-91 339.3 233 71.7
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 3.4e-91 339.0 223 74.4
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 4.4e-91 338.6 221 74.2
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.4e-91 338.6 233 72.5
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 4.4e-91 338.6 280 64.6
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 5.8e-91 338.2 252 67.9
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 5.8e-91 338.2 251 68.1
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.3e-90 337.0 257 66.9
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.7e-90 336.7 233 72.5
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.7e-90 336.7 240 69.6
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 2.9e-90 335.9 223 74.9
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 6.4e-90 334.7 233 71.7
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 1.9e-89 333.2 283 63.6
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.9e-89 333.2 238 71.4
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 3.2e-89 332.4 237 69.2
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 3.2e-89 332.4 235 68.9
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 4.2e-89 332.0 275 64.0
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 4.2e-89 332.0 251 66.5
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 7.1e-89 331.3 225 72.4
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 2.7e-88 329.3 262 63.7
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 2.7e-88 329.3 237 70.0
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 2.7e-88 329.3 251 65.7
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 6.0e-88 328.2 221 73.8
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.3e-87 327.0 250 64.8
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 1.3e-87 327.0 279 63.1
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 3.0e-87 325.9 254 64.2
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 5.1e-87 325.1 221 73.3
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 5.1e-87 325.1 242 66.1
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 6.6e-87 324.7 221 72.9
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 6.6e-87 324.7 246 66.3
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 8.7e-87 324.3 247 65.2
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 8.7e-87 324.3 246 65.4
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 2.5e-86 322.8 246 65.0
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 9.6e-86 320.9 279 62.7
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 1.6e-85 320.1 260 63.1
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 2.1e-85 319.7 230 71.3
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 2.1e-85 319.7 222 71.2
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 3.6e-85 318.9 243 65.8
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 3.6e-85 318.9 237 68.8
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 4.8e-85 318.5 246 65.9
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 4.8e-85 318.5 221 73.3
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 6.2e-85 318.2 223 70.9
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 6.2e-85 318.2 224 68.3
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 1.4e-84 317.0 247 64.4
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 2.4e-84 316.2 253 65.6
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 1.5e-83 313.5 258 62.8
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 2.6e-83 312.8 242 70.2
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 5.8e-83 311.6 283 58.7
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 3.2e-81 305.8 228 64.9
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 7.1e-81 304.7 238 63.0
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 9.3e-81 304.3 237 62.9
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 2.1e-80 303.1 251 62.5
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.0e-79 300.8 221 68.8
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.3e-79 300.4 222 68.5
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 8.7e-79 297.7 227 67.4
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.9e-78 296.6 226 64.2
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 7.4e-78 294.7 190 76.3
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 2.1e-77 293.1 270 57.8
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 1.1e-76 290.8 311 52.7
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 2.4e-76 289.7 191 75.9
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 8.4e-74 281.2 182 76.9
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.9e-73 280.0 236 61.4
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 4.6e-72 275.4 276 58.0
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 6.0e-72 275.0 183 73.2
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 8.2e-69 264.6 241 57.3
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 2.9e-66 256.1 274 51.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.0e-63 247.7 217 60.4
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 3.9e-63 245.7 229 57.2
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 8.7e-63 244.6 286 48.3
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 1.6e-61 240.4 178 70.2
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 1.8e-60 236.9 187 65.2
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 2.4e-60 236.5 240 51.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 9.0e-60 234.6 166 68.7
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 3.6e-56 222.6 187 61.5
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 3.0e-55 219.5 203 51.7
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 6.7e-55 218.4 143 74.1
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 5.7e-54 215.3 328 41.8
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.8e-52 210.3 150 72.7
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 2.4e-52 209.9 187 62.0
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.4e-51 206.1 199 56.3
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 1.2e-48 197.6 148 62.8
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 8.8e-47 191.4 142 68.3
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 1.6e-32 144.1 88 81.8
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.8e-31 140.6 173 48.0
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.5e-30 137.5 143 45.5
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 9.1e-28 128.3 268 35.1
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 2.7e-27 126.7 108 59.3
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 3.6e-24 116.3 287 31.4
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 4.8e-21 105.9 60 83.3
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.9e-10 70.1 38 84.2
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.9e-10 70.1 38 84.2
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 1.1e-09 68.2 110 38.2
TAR119G0001 Trochodendron aralioides HOM05D002234 ORTHO05D002254 1.1e-09 68.2 234 32.9
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 1.5e-09 67.8 38 81.6
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 4.3e-09 66.2 271 26.6
Potri.001G137900 Populus trichocarpa HOM05D002234 ORTHO05D002254 7.3e-09 65.5 273 28.2
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 7.3e-09 65.5 241 27.4
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 9.5e-09 65.1 124 29.8
SEGI_22906 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 3.6e-08 63.2 236 26.7
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 8.0e-08 62.0 263 25.9
Atru.chr6.1613 Acer truncatum HOM05D002234 ORTHO05D002254 1.0e-07 61.6 237 28.7
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 1.0e-07 61.6 269 23.8
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 1.0e-07 61.6 246 24.8
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 1.4e-07 61.2 240 29.2
Cfa000140 Carpinus fangiana HOM05D002234 ORTHO05D002254 1.8e-07 60.8 234 25.2
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 2.3e-07 60.5 230 30.0
CANSAT56G3028 Cannabis sativa HOM05D002234 ORTHO05D002254 4.0e-07 59.7 171 28.7
Manes.17G014600 Manihot esculenta HOM05D002234 ORTHO05D002254 6.8e-07 58.9 241 27.0
Cre14.g611450 Chlamydomonas reinhardtii HOM05D002234 ORTHO05D002254 8.9e-07 58.5 94 38.3
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 2.6e-06 57.0 218 27.1
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 4.4e-06 56.2 220 26.4
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 4.4e-06 56.2 233 24.0
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 5.8e-06 55.8 168 29.2
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 5.8e-06 55.8 95 34.7
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 5.8e-06 55.8 95 34.7
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 5.8e-06 55.8 220 26.8
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 5.8e-06 55.8 232 23.7
QL12p001328 Quercus lobata HOM05D002234 ORTHO05D002254 5.8e-06 55.8 242 28.1
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 7.5e-06 55.5 223 26.9
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 7.5e-06 55.5 53 50.9
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 9.8e-06 55.1 220 26.4
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 9.8e-06 55.1 220 25.9
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 9.8e-06 55.1 220 26.4


User provided reference genes

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