Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.8e-136 489.2 235 100.0
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 2.1e-116 422.5 235 89.4
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.4e-104 383.3 235 79.6
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 3.4e-103 378.6 234 79.9
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 1.1e-101 373.6 232 77.6
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.9e-101 372.9 231 77.9
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 4.2e-101 371.7 234 77.4
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 5.4e-101 371.3 234 76.1
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 7.1e-101 370.9 234 76.9
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 2.1e-100 369.4 234 75.6
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 2.1e-100 369.4 231 76.6
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 2.7e-100 369.0 234 76.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 3.5e-100 368.6 231 77.1
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.5e-100 368.6 231 77.5
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 3.5e-100 368.6 232 76.7
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 7.8e-100 367.5 232 76.7
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.3e-99 366.7 231 76.6
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.3e-99 365.9 230 77.0
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.0e-99 365.5 235 75.3
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 3.0e-99 365.5 234 77.4
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 5.1e-99 364.8 234 76.5
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 6.6e-99 364.4 231 75.3
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 8.7e-99 364.0 231 75.3
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 8.7e-99 364.0 234 76.1
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 2.5e-98 362.5 235 74.5
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.6e-98 361.3 234 75.2
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.6e-98 361.3 231 75.3
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 9.6e-98 360.5 231 74.5
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 1.3e-97 360.1 233 74.7
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.3e-97 360.1 234 73.9
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.6e-97 359.8 231 75.3
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.1e-97 359.4 234 74.8
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 2.1e-97 359.4 231 75.3
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 6.2e-97 357.8 234 75.2
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 8.1e-97 357.5 234 74.8
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 8.1e-97 357.5 234 74.4
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.1e-96 357.1 221 77.8
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.1e-96 357.1 231 74.0
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.4e-96 356.7 234 75.2
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.4e-96 355.9 234 74.8
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.4e-96 355.9 231 72.3
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.1e-96 355.5 234 74.8
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 4.0e-96 355.1 231 74.5
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.0e-96 355.1 234 74.8
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 4.0e-96 355.1 234 73.1
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 6.9e-96 354.4 231 73.6
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.2e-95 353.6 234 72.6
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.5e-95 353.2 231 74.0
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.6e-95 352.4 231 72.3
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.6e-95 352.4 234 73.5
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 2.6e-95 352.4 228 75.4
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 3.4e-95 352.1 231 73.6
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 3.4e-95 352.1 231 73.6
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 3.4e-95 352.1 231 73.6
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 4.4e-95 351.7 234 72.2
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 7.6e-95 350.9 231 72.7
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 9.9e-95 350.5 234 74.4
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 9.9e-95 350.5 231 74.0
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.3e-94 350.1 234 71.8
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.7e-94 349.7 234 72.2
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.2e-94 349.4 231 71.4
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 2.9e-94 349.0 231 71.4
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 2.9e-94 349.0 231 71.9
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 4.9e-94 348.2 234 73.5
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 6.4e-94 347.8 229 71.2
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.4e-94 347.4 234 71.8
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 8.4e-94 347.4 234 73.1
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.1e-93 347.1 230 71.7
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 2.4e-93 345.9 231 72.3
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 4.2e-93 345.1 229 71.2
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 5.4e-93 344.7 234 70.1
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 7.1e-93 344.4 231 70.6
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 7.1e-93 344.4 231 73.2
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 9.3e-93 344.0 229 70.3
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.2e-92 343.6 234 71.4
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.2e-92 343.6 231 72.3
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.2e-92 343.6 231 72.3
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 1.6e-92 343.2 222 72.1
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.6e-92 343.2 216 75.9
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.1e-92 342.8 226 72.6
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 2.7e-92 342.4 229 70.3
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 3.5e-92 342.0 229 70.3
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 3.5e-92 342.0 234 71.4
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.5e-92 342.0 234 70.9
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 3.5e-92 342.0 234 69.2
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 3.5e-92 342.0 231 68.4
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 4.6e-92 341.7 228 72.8
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 6.0e-92 341.3 229 70.3
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 7.9e-92 340.9 231 71.9
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 7.9e-92 340.9 235 71.1
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.9e-92 340.9 231 70.6
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 7.9e-92 340.9 229 70.3
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.3e-91 340.1 230 70.0
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.7e-91 339.7 231 69.7
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.0e-91 339.0 231 70.1
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 5.1e-91 338.2 229 69.9
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 6.6e-91 337.8 227 70.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 6.6e-91 337.8 227 70.9
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 8.7e-91 337.4 241 71.0
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.9e-90 336.3 227 70.5
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.9e-90 336.3 251 66.5
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 5.6e-90 334.7 227 70.0
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 7.4e-90 334.3 231 71.0
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 2.8e-89 332.4 234 67.9
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 6.2e-89 331.3 231 68.0
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 9.0e-88 327.4 274 63.5
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 3.4e-87 325.5 230 67.0
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 3.8e-86 322.0 232 65.5
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.4e-85 319.3 225 68.0
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 3.2e-85 318.9 317 54.9
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.6e-84 316.6 236 67.8
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.6e-84 316.6 225 68.0
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.1e-84 316.2 232 64.7
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 6.0e-84 314.7 225 66.2
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.3e-83 313.5 173 86.1
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 6.7e-83 311.2 224 66.1
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.9e-82 309.7 174 84.5
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.6e-81 306.6 235 65.1
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.6e-79 299.3 189 76.7
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 3.9e-75 285.4 428 42.8
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 5.0e-70 268.5 168 76.8
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 2.5e-69 266.2 168 76.8
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 6.3e-65 251.5 227 55.9
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 6.9e-64 248.1 168 69.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.2e-62 243.0 195 62.6
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.5e-55 220.3 141 73.0
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 3.3e-50 202.6 158 65.8
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 4.4e-50 202.2 137 71.5
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.7e-46 190.3 234 43.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 7.2e-45 184.9 222 44.6
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.0e-43 181.0 109 80.7
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 7.7e-39 164.9 171 50.9
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 2.5e-37 159.8 161 48.4
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.5e-37 159.8 96 79.2
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.8e-33 146.4 115 62.6
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 3.7e-33 146.0 95 72.6
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 2.7e-31 139.8 79 84.8
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 7.2e-29 131.7 96 68.8
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.4e-24 117.5 78 73.1
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 4.1e-24 115.9 67 83.6
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.1e-21 107.8 64 78.1
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.0e-19 101.3 72 70.8
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.3e-17 94.4 58 81.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.5e-10 70.9 42 76.2
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.4e-10 69.7 59 64.4
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 7.5e-10 68.6 41 82.9
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 4.9e-09 65.9 35 80.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 7.0e-08 62.0 32 87.5


User provided reference genes

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