Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 5.7e-141 504.2 249 100.0
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 5.0e-137 491.1 249 98.4
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 4.5e-122 441.4 250 85.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.8e-121 438.3 249 85.5
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 5.0e-121 438.0 250 84.4
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 5.5e-120 434.5 250 84.0
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 3.6e-119 431.8 250 83.6
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.6e-117 425.6 251 81.7
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 7.5e-117 424.1 244 83.2
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 3.7e-116 421.8 250 80.4
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 3.1e-115 418.7 244 81.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.8e-111 405.6 251 79.7
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.4e-109 398.7 244 79.5
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 8.3e-108 394.0 244 78.3
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 5.0e-105 384.8 249 75.9
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 7.3e-104 380.9 249 73.5
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.1e-103 379.4 244 75.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.1e-103 379.4 249 72.7
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 3.6e-103 378.6 243 74.5
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.6e-103 378.6 249 72.7
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.7e-103 378.3 249 73.1
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 4.7e-103 378.3 249 74.3
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 6.1e-103 377.9 249 73.5
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 8.0e-103 377.5 243 73.7
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.2e-102 374.8 249 73.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.5e-101 373.2 248 71.8
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 2.6e-101 372.5 249 72.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 9.8e-101 370.5 250 72.4
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 2.2e-100 369.4 244 73.4
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.9e-100 369.0 247 72.9
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 4.9e-100 368.2 249 71.1
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.1e-99 367.1 244 73.0
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.1e-99 367.1 248 71.0
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.0e-98 362.8 244 70.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 7.8e-98 360.9 243 72.4
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.3e-97 360.1 281 64.1
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 6.6e-97 357.8 244 68.4
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 6.6e-97 357.8 243 71.2
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 6.6e-97 357.8 246 69.9
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.1e-96 357.1 241 71.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 5.6e-96 354.8 248 70.2
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.8e-95 352.4 243 70.0
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 4.7e-95 351.7 243 68.7
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 8.0e-95 350.9 196 85.2
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.4e-94 350.1 251 67.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.3e-94 349.4 248 69.8
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.0e-94 348.6 243 70.8
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.9e-94 347.4 245 68.6
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.2e-93 347.1 248 68.5
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.6e-93 345.9 245 68.2
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 3.4e-93 345.5 249 68.3
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.8e-93 344.7 245 67.3
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 5.8e-93 344.7 242 69.4
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 6.4e-92 341.3 243 69.1
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.4e-91 340.1 244 66.8
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.9e-91 339.7 249 67.9
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.9e-91 339.7 244 68.9
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 2.4e-91 339.3 242 68.6
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 3.2e-91 339.0 200 79.5
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 9.2e-91 337.4 242 64.5
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.2e-90 337.0 245 67.8
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.2e-90 337.0 249 68.3
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.6e-90 336.7 245 67.3
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.6e-90 336.7 237 66.7
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.6e-90 336.7 243 67.9
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.0e-90 336.3 249 67.5
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 2.7e-90 335.9 274 62.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 3.5e-90 335.5 249 67.1
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 6.0e-90 334.7 245 66.5
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 7.8e-90 334.3 243 65.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 3.0e-89 332.4 243 66.7
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.0e-89 332.4 245 64.5
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.1e-88 330.5 246 64.6
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 1.5e-88 330.1 216 72.2
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 2.5e-88 329.3 247 65.6
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.5e-88 329.3 242 65.7
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 4.3e-88 328.6 242 65.3
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 5.6e-88 328.2 245 66.1
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 9.5e-88 327.4 245 65.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 2.1e-87 326.2 244 65.2
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 2.1e-87 326.2 244 65.2
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 6.2e-87 324.7 206 75.7
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 8.1e-87 324.3 206 75.7
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.4e-86 323.6 205 75.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.6e-85 319.3 242 64.5
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 4.4e-85 318.5 244 64.3
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 6.4e-84 314.7 221 69.2
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 3.0e-81 305.8 242 61.6
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 4.3e-80 302.0 245 61.6
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 6.2e-79 298.1 255 59.6
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.1e-78 295.8 216 67.1
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 6.8e-78 294.7 182 77.5
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 9.9e-77 290.8 192 70.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.7e-76 290.0 215 64.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 2.2e-76 289.7 273 56.8
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 4.9e-76 288.5 215 64.7
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 4.1e-75 285.4 216 64.8
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 4.1e-75 285.4 216 64.8
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.6e-74 283.5 216 64.8
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 6.0e-74 281.6 216 64.4
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.3e-73 279.6 203 66.0
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.1e-72 277.3 242 58.3
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.0e-69 266.5 247 57.1
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 3.4e-69 265.8 242 55.8
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.3e-68 263.8 245 52.2
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 4.9e-68 261.9 193 66.3
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 4.9e-68 261.9 232 58.6
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.2e-66 257.3 245 49.8
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.5e-66 255.8 243 50.2
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 6.0e-66 255.0 183 65.6
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 6.0e-66 255.0 242 61.2
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.3e-65 253.1 245 49.4
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.1e-64 250.8 164 70.1
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.3e-64 248.8 219 58.9
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.1e-63 246.5 143 81.1
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 2.6e-61 239.6 242 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.4e-61 239.2 240 48.8
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.4e-59 233.8 198 59.6
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 7.1e-59 231.5 166 65.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.1e-59 231.5 242 46.3
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 6.0e-58 228.4 196 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.5e-56 223.0 224 49.6
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.8e-55 219.5 214 50.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 3.7e-55 219.2 178 62.4
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-54 217.6 213 49.8
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.1e-51 207.6 172 59.9
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.4e-51 206.5 226 51.3
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.0e-49 201.1 166 61.4
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 2.3e-49 199.9 136 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.9e-48 196.8 194 50.0
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 4.8e-47 192.2 193 51.8
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.5e-45 185.7 236 46.2
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 1.0e-44 184.5 115 76.5
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.2e-42 177.6 192 50.0
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.3e-41 174.1 110 78.2
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 2.8e-39 166.4 261 38.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.4e-37 159.5 105 66.7
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.6e-37 158.3 103 69.9
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.2e-36 156.8 105 68.6
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.8e-33 147.1 102 69.6
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.5e-32 144.1 225 42.7
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.1e-30 134.8 161 49.1
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.5e-21 107.5 161 38.5
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.5e-21 105.9 98 52.0
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.8e-17 94.0 67 65.7
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 2.4e-14 83.6 64 62.5
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.1e-14 83.2 72 54.2
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.9e-11 73.9 72 51.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-10 71.2 81 42.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.1e-10 68.9 61 54.1
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 3.0e-09 66.6 107 33.6


User provided reference genes

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