Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KJ3KZU Arachis hypogaea HOM05D000290 ORTHO05D026922 5.5e-84 314.3 164 100.0
arahy.Tifrunner.gnm1.ann1.AS9ABP Arachis hypogaea HOM05D000290 ORTHO05D007415 9.5e-20 100.9 65 72.3
arahy.Tifrunner.gnm1.ann1.IU7X6X Arachis hypogaea HOM05D000290 ORTHO05D007415 9.5e-20 100.9 65 72.3
Lalb_Chr06g0162261 Lupinus albus HOM05D000290 ORTHO05D007415 8.1e-19 97.8 71 67.6
Lalb_Chr02g0142071 Lupinus albus HOM05D000290 ORTHO05D007415 3.1e-18 95.9 78 62.8
Lj5g0003555 Lotus japonicus HOM05D000290 ORTHO05D007415 1.7e-16 90.1 79 54.4
Cfa001614 Carpinus fangiana HOM05D000290 ORTHO05D007415 2.2e-16 89.7 65 64.6
Ca_10576_v3 Cicer arietinum L. HOM05D000290 ORTHO05D007415 2.2e-16 89.7 68 60.3
Haze_16906 Corylus avellana HOM05D000290 ORTHO05D007415 2.9e-16 89.4 65 64.6
Medtr1g095480 Medicago truncatula HOM05D000290 ORTHO05D007415 2.9e-16 89.4 66 62.1
VMungo0720G0458 Vigna mungo HOM05D000290 ORTHO05D007415 6.4e-16 88.2 78 56.4
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 8.4e-16 87.8 66 62.1
C03p25970 Brassica napus HOM05D000290 ORTHO05D007415 1.1e-15 87.4 82 56.1
Phvul.007G093900 Phaseolus vulgaris HOM05D000290 ORTHO05D007415 1.1e-15 87.4 78 55.1
Thhalv10016257m.g Eutrema salsugineum HOM05D000290 ORTHO05D007415 1.4e-15 87.0 64 65.6
BcaB01g03651 Brassica carinata HOM05D000290 ORTHO05D007415 1.9e-15 86.7 64 67.2
A03p21900 Brassica napus HOM05D000290 ORTHO05D007415 1.9e-15 86.7 64 67.2
BolC3t14982H Brassica oleracea HOM05D000290 ORTHO05D007415 1.9e-15 86.7 64 67.2
BraA03t11426Z Brassica rapa HOM05D000290 ORTHO05D007415 1.9e-15 86.7 64 67.2
CSS0015563 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007415 2.4e-15 86.3 83 49.4
CSS0025800 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007415 2.4e-15 86.3 83 49.4
DCAR_006445 Daucus carota HOM05D000290 ORTHO05D007415 2.4e-15 86.3 65 60.0
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.4e-15 86.3 62 64.5
Cpa.g.sc53.63 Carica papaya HOM05D000290 ORTHO05D007415 3.2e-15 85.9 76 55.3
Psat6g185080 Pisum sativum HOM05D000290 ORTHO05D007415 4.2e-15 85.5 66 57.6
FAN10G2948 Fragaria x ananassa HOM05D000290 ORTHO05D007415 9.2e-15 84.3 83 53.0
Glyma.20G179100 Glycine max HOM05D000290 ORTHO05D007415 9.2e-15 84.3 68 57.4
THA.LOC104809972 Tarenaya hassleriana HOM05D000290 ORTHO05D007415 9.2e-15 84.3 64 62.5
TWI63G0995 Tripterygium wilfordii HOM05D000290 ORTHO05D007415 9.2e-15 84.3 64 62.5
Hma1.2p1_0063F.1_g034380 Hydrangea macrophylla HOM05D000290 ORTHO05D007415 1.2e-14 84.0 77 54.5
Hma1.2p1_0063F.1_g034390 Hydrangea macrophylla HOM05D000290 ORTHO05D007415 1.2e-14 84.0 77 54.5
RcHm_v2.0_Chr1g0363651 Rosa chinensis HOM05D000290 ORTHO05D007415 1.2e-14 84.0 83 53.0
Sp4g21520 Schrenkiella parvula HOM05D000290 ORTHO05D007415 1.6e-14 83.6 64 62.5
AT2G39190 Arabidopsis thaliana HOM05D000290 ORTHO05D007415 2.1e-14 83.2 65 63.1
Carub.0004s2123 Capsella rubella HOM05D000290 ORTHO05D007415 2.7e-14 82.8 64 64.1
Ciclev10030711m.g Citrus clementina HOM05D000290 ORTHO05D007415 2.7e-14 82.8 64 59.4
CARHR133940 Cardamine hirsuta HOM05D000290 ORTHO05D007415 3.5e-14 82.4 64 62.5
Glyma.10G212000 Glycine max HOM05D000290 ORTHO05D007415 3.5e-14 82.4 68 57.4
CiPaw.02G174700 Carya illinoinensis HOM05D000290 ORTHO05D007415 4.6e-14 82.0 65 56.9
FvH4_7g19760 Fragaria vesca HOM05D000290 ORTHO05D007415 4.6e-14 82.0 83 51.8
FAN06G5088 Fragaria x ananassa HOM05D000290 ORTHO05D007415 4.6e-14 82.0 83 51.8
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 6.0e-14 81.6 65 60.0
FAN03G2244 Fragaria x ananassa HOM05D000290 ORTHO05D007415 6.0e-14 81.6 83 51.8
Sed0009428 Sechium edule HOM05D000290 ORTHO05D007415 7.8e-14 81.3 79 53.2
GSVIVG01016296001 Vitis vinifera HOM05D000290 ORTHO05D007415 7.8e-14 81.3 78 50.0
PSO063G6866 Papaver somniferum HOM05D000290 ORTHO05D007415 1.0e-13 80.9 84 50.0
Potri.010G221000 Populus trichocarpa HOM05D000290 ORTHO05D007415 1.3e-13 80.5 66 54.5
PSO339G6283 Papaver somniferum HOM05D000290 ORTHO05D007415 1.7e-13 80.1 84 48.8
MELO3C012436.2 Cucumis melo HOM05D000290 ORTHO05D007415 3.0e-13 79.3 65 56.9
QL08p056306 Quercus lobata HOM05D000290 ORTHO05D007415 3.0e-13 79.3 65 56.9
CsaV3_5G036380 Cucumis sativus L. HOM05D000290 ORTHO05D007415 3.9e-13 79.0 76 51.3
Aa31LG5G20180 Aethionema arabicum HOM05D000290 ORTHO05D007415 5.1e-13 78.6 64 56.2
Sabra10G0170700 Salix brachista HOM05D000290 ORTHO05D007415 5.1e-13 78.6 66 53.0
TAR636G1312 Trochodendron aralioides HOM05D000290 ORTHO05D007415 5.1e-13 78.6 65 55.4
ClCG05G020930 Citrullus lanatus HOM05D000290 ORTHO05D007415 6.6e-13 78.2 76 51.3
Manes.07G104400 Manihot esculenta HOM05D000290 ORTHO05D007415 6.6e-13 78.2 57 59.6
ECA232G0301 Erigeron canadensis HOM05D000290 ORTHO05D007415 8.7e-13 77.8 84 42.9
Cc09_g02000 Coffea canephora HOM05D000290 ORTHO05D007415 1.1e-12 77.4 79 49.4
Actinidia03052 Actinidia chinensis HOM05D000290 ORTHO05D007415 1.5e-12 77.0 64 54.7
Gohir.A10G206900 Gossypium hirsutum HOM05D000290 ORTHO05D007415 1.9e-12 76.6 75 48.0
Aqoxy1G01252 Aquilegia oxysepala HOM05D000290 ORTHO05D007415 2.5e-12 76.3 64 54.7
THA.LOC104806081 Tarenaya hassleriana HOM05D000245 ORTHO05D026922 5.6e-12 75.1 60 60.0
Migut.F01770 Erythranthe guttata HOM05D000290 ORTHO05D007415 7.3e-12 74.7 60 53.3
Gohir.D10G215000 Gossypium hirsutum HOM05D000290 ORTHO05D007415 7.3e-12 74.7 78 46.2
SGA_v2.0_scaffold341G49361 Striga asiatica HOM05D000290 ORTHO05D007415 7.3e-12 74.7 63 52.4
MSTRG.369 Avicennia marina HOM05D000290 ORTHO05D007415 9.6e-12 74.3 60 53.3
AL4G36490 Arabidopsis lyrata HOM05D000290 ORTHO05D007415 1.6e-11 73.6 56 62.5
vmacro07077 Vaccinium macrocarpon HOM05D000290 ORTHO05D007415 1.6e-11 73.6 65 50.8
CANSAT56G0046 Cannabis sativa HOM05D000290 ORTHO05D007415 2.1e-11 73.2 78 50.0
Gorai.011G240500 Gossypium raimondii HOM05D000290 ORTHO05D007415 2.1e-11 73.2 78 44.9
Prupe.8G142600 Prunus persica HOM05D000290 ORTHO05D007415 2.8e-11 72.8 78 46.2
Lj1A916G22 Lonicera japonica HOM05D000290 ORTHO05D007415 3.6e-11 72.4 65 50.8
Sc20g0001930 Simmondsia chinensis HOM05D000290 ORTHO05D007415 4.7e-11 72.0 62 51.6
Oeu034811.1 Olea europaea HOM05D000290 ORTHO05D007415 6.2e-11 71.6 58 53.4
Thecc.10G071500 Theobroma cacao HOM05D000290 ORTHO05D007415 1.4e-10 70.5 78 42.3
Eucgr.G02820 Eucalyptus grandis HOM05D000290 ORTHO05D007415 2.4e-10 69.7 65 49.2
CDE08G1592 Ceratophyllum demersum HOM05D000290 ORTHO05D007415 5.2e-10 68.6 66 48.5
Duzib106G1672 Durio zibethinus HOM05D000290 ORTHO05D007415 5.2e-10 68.6 76 43.4
MD07G1176000 Malus domestica HOM05D000290 ORTHO05D007415 6.9e-10 68.2 54 55.6
PGR142G4180 Punica granatum HOM05D000290 ORTHO05D007415 9.0e-10 67.8 94 40.4
HanXRQChr09g0246431 Helianthus annuus HOM05D000290 ORTHO05D007415 1.2e-09 67.4 82 40.2
Lsat_1_v5_gn_9_68761 Lactuca sativa HOM05D000290 ORTHO05D007415 1.2e-09 67.4 79 39.2
Rhsim09G0040800 Rhododendron simsii HOM05D000290 ORTHO05D007415 1.2e-09 67.4 63 49.2
Nitab4.5_0000233g0060 Nicotiana tabacum HOM05D000290 ORTHO05D007415 1.5e-09 67.0 65 44.6
Sopen04g019370 Solanum pennellii HOM05D000290 ORTHO05D007415 2.0e-09 66.6 65 46.2
AUR62037660 Chenopodium quinoa HOM05D000290 ORTHO05D007415 3.4e-09 65.9 78 41.0
AUR62041044 Chenopodium quinoa HOM05D000290 ORTHO05D007415 3.4e-09 65.9 65 44.6
SalBow3G1677 Salvia bowleyana HOM05D000290 ORTHO05D007415 3.4e-09 65.9 63 47.6
Nitab4.5_0001448g0010 Nicotiana tabacum HOM05D000290 ORTHO05D007415 4.4e-09 65.5 65 43.1
Lsat_1_v5_gn_5_178821 Lactuca sativa HOM05D000290 ORTHO05D007415 5.8e-09 65.1 79 38.0
EL10Ac2g03246 Beta vulgaris HOM05D000290 ORTHO05D007415 9.9e-09 64.3 83 36.1
CAN.G29.6 Capsicum annuum HOM05D000290 ORTHO05D007415 4.9e-08 62.0 67 41.8
COL.COLO4_23704 Corchorus olitorius HOM05D000290 ORTHO05D007415 8.4e-08 61.2 68 41.2
CDE02G2717 Ceratophyllum demersum HOM05D000290 ORTHO05D007415 2.4e-07 59.7 65 44.6
ATR0115G028 Amborella trichopoda HOM05D000290 ORTHO05D007415 3.2e-07 59.3 66 40.9
Peaxi162Scf00272g00221 Petunia axillaris HOM05D000290 ORTHO05D007415 4.2e-07 58.9 71 39.4
Ah.16g106370 Amaranthus hybridus HOM05D000290 ORTHO05D007415 5.4e-07 58.5 65 36.9
unitig_22.g5127 Utricularia gibba HOM05D000290 ORTHO05D007415 5.4e-07 58.5 73 37.0
Duzib138G1758 Durio zibethinus HOM05D000007 ORTHO05D000521 1.6e-06 57.0 53 49.1


User provided reference genes

Program Settings