Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 0.0e+00 1317.0 1028 100.0
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 0.0e+00 1139.0 1057 84.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 3.1e-52 211.5 325 51.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 4.5e-51 207.6 291 50.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.4e-47 196.1 299 50.5
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 4.1e-44 184.5 670 35.2
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.3e-42 179.5 380 45.0
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.3e-41 174.9 296 47.0
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 3.6e-40 171.4 665 35.9
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.5e-38 166.0 682 33.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 8.3e-37 160.2 429 35.4
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.6e-35 154.5 316 42.7
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.4e-30 138.3 296 39.2
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.9e-28 132.5 253 41.1
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.4e-28 132.1 224 42.4
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.3e-26 125.6 437 32.7
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.5e-25 122.9 225 44.4
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 5.6e-25 120.9 225 44.0
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 5.6e-25 120.9 641 28.4
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 2.1e-24 119.0 320 33.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.7e-24 117.9 421 33.5
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 4.7e-24 117.9 330 33.3
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 4.0e-23 114.8 270 38.1
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 5.2e-23 114.4 285 35.4
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.6e-22 112.1 437 29.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.6e-22 112.1 323 35.3
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 5.8e-22 110.9 263 39.9
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 7.6e-22 110.5 522 30.1
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.2e-21 109.0 350 33.1
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 6.4e-21 107.5 670 28.7
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.4e-20 106.3 203 38.4
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.9e-20 105.9 282 36.9
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.9e-20 105.9 213 39.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 3.2e-20 105.1 342 31.9
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 7.1e-20 104.0 587 29.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.2e-19 103.2 370 31.4
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.1e-19 102.4 268 35.4
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.0e-19 100.9 444 31.5
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 7.8e-19 100.5 538 29.2
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 5.1e-18 97.8 677 27.8
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.1e-17 96.7 405 29.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.1e-17 96.7 623 28.6
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.9e-17 95.9 140 47.1
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.9e-17 95.9 382 33.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.5e-17 95.5 377 30.2
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.3e-17 95.1 392 30.1
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.6e-17 94.4 624 27.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 4.7e-16 91.3 388 30.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.7e-16 91.3 337 31.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 6.2e-16 90.9 392 30.1
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.8e-15 89.4 352 31.0
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.1e-15 88.6 238 35.7
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.1e-15 88.6 411 30.2
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.1e-15 88.6 402 27.6
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 4.0e-15 88.2 250 36.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 4.0e-15 88.2 594 26.6
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-14 86.3 624 27.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.0e-14 85.9 602 28.7
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 2.6e-14 85.5 427 31.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 3.4e-14 85.1 417 28.8
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.4e-14 85.1 428 28.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.4e-14 84.7 637 26.8
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.6e-14 84.0 387 28.7
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 7.6e-14 84.0 525 28.2
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 9.9e-14 83.6 528 27.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 9.9e-14 83.6 393 29.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-13 83.2 220 36.8
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-13 83.2 402 29.9
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-13 83.2 332 28.9
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.7e-13 82.8 319 32.9
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.2e-13 82.4 428 27.3
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-13 82.4 386 28.2
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.2e-13 82.4 516 26.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 3.8e-13 81.6 605 27.4
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.8e-13 81.6 619 28.9
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 4.9e-13 81.3 580 27.2
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 6.4e-13 80.9 385 30.1
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 8.4e-13 80.5 410 28.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 8.4e-13 80.5 529 29.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.4e-12 79.7 296 29.7
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.4e-12 79.0 568 27.5
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.2e-12 78.6 375 28.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 3.2e-12 78.6 202 34.2
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.2e-12 78.2 314 31.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 4.2e-12 78.2 252 31.3
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 5.4e-12 77.8 202 36.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 5.4e-12 77.8 202 36.1
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 5.4e-12 77.8 188 38.3
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.3e-12 77.0 413 29.1
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-11 76.6 390 28.5
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-11 76.6 390 28.5
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 4.6e-11 74.7 404 32.7
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.0e-10 73.6 102 47.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.0e-10 73.6 306 27.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.0e-10 73.6 565 26.0
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.3e-10 73.2 597 25.5
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.3e-10 72.4 556 26.4
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.0e-10 72.0 566 27.4
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 3.0e-10 72.0 416 26.7
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.0e-10 72.0 593 26.6
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.9e-10 71.6 688 25.7
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.1e-09 70.1 503 29.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.3e-09 68.6 379 28.5
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 4.3e-09 68.2 428 27.6
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 4.3e-09 68.2 428 27.6
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 7.3e-09 67.4 634 27.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 9.6e-09 67.0 409 26.7
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 9.6e-09 67.0 87 46.0
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.3e-08 66.6 634 26.3
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.6e-08 66.2 449 28.3
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.1e-08 65.9 287 31.7
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.8e-07 62.8 406 26.6
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 2.4e-07 62.4 525 26.9
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.4e-07 62.4 52 57.7
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 5.3e-07 61.2 554 28.7
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 5.3e-07 61.2 306 29.1
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 6.9e-07 60.8 144 32.6
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 9.0e-07 60.5 36 75.0
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 9.0e-07 60.5 45 62.2
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.2e-06 60.1 647 25.3
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.2e-06 60.1 39 71.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.2e-06 60.1 643 24.7
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 2.6e-06 58.9 321 26.5
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 3.4e-06 58.5 642 25.4
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.4e-06 58.5 44 63.6
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.4e-06 58.5 45 62.2
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 3.4e-06 58.5 36 72.2
Medtr8g008690 Medicago truncatula HOM05D004299 ORTHO05D003557 3.4e-06 58.5 39 76.9
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 3.4e-06 58.5 44 68.2
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 4.4e-06 58.2 166 34.3
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 5.8e-06 57.8 505 27.1
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.6e-06 57.4 280 28.9
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 7.6e-06 57.4 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 7.6e-06 57.4 36 75.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 7.6e-06 57.4 40 65.0


User provided reference genes

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