Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 8.4e-171 603.6 305 100.0
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 6.1e-161 570.9 307 95.1
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 4.2e-154 548.1 287 96.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 6.8e-104 381.3 235 80.0
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.6e-103 379.4 261 75.1
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 7.5e-103 377.9 266 75.2
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 7.5e-103 377.9 247 79.4
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.4e-101 372.9 291 67.7
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 2.7e-100 369.4 226 81.0
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 4.6e-100 368.6 279 69.9
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.7e-99 366.7 209 84.7
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.7e-99 366.7 258 75.2
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.3e-99 366.3 239 77.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.3e-99 366.3 239 77.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.0e-99 365.2 239 76.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 2.5e-98 362.8 272 69.9
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.5e-98 362.8 209 83.3
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.3e-98 362.1 281 69.4
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 5.6e-98 361.7 222 79.3
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 7.3e-98 361.3 224 77.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 9.5e-98 360.9 261 72.8
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.2e-97 360.5 257 72.8
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.6e-97 359.0 211 83.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 4.7e-97 358.6 210 83.3
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 3.1e-96 355.9 224 77.7
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 6.8e-96 354.8 252 74.6
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 8.9e-96 354.4 212 81.1
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.5e-95 353.6 209 82.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 2.0e-95 353.2 263 70.0
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.0e-95 353.2 266 68.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 3.4e-95 352.4 209 82.8
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.4e-95 352.1 256 73.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 7.5e-95 351.3 218 78.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 7.5e-95 351.3 211 80.6
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-94 350.1 304 63.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.7e-94 350.1 278 67.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.2e-94 349.7 234 72.6
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.9e-94 349.4 264 67.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.9e-94 349.4 276 68.1
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 6.4e-94 348.2 261 67.8
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 6.4e-94 348.2 261 67.8
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.4e-94 348.2 212 79.2
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.1e-93 347.4 215 78.6
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-93 347.1 261 67.8
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-93 346.7 263 67.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-93 346.7 263 67.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.4e-93 346.3 253 70.0
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.4e-93 346.3 249 71.1
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 4.1e-93 345.5 287 66.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.1e-93 345.5 212 78.3
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.1e-92 343.2 214 77.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.1e-92 343.2 219 76.3
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-92 342.8 246 71.1
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.5e-92 342.4 269 65.8
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 6.0e-92 341.7 208 80.3
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-91 340.9 211 77.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-91 340.9 211 77.7
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.3e-91 340.5 211 77.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.7e-91 340.1 235 73.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-91 339.7 211 77.3
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 5.1e-91 338.6 245 69.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 8.6e-91 337.8 286 63.6
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 8.6e-91 337.8 211 78.7
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.6e-91 337.8 263 67.3
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-90 337.0 213 77.9
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-90 337.0 265 65.3
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.9e-90 336.7 242 71.1
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.3e-90 335.9 215 74.0
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.3e-90 335.5 263 66.9
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 5.6e-90 335.1 221 73.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.3e-90 334.7 286 63.3
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 7.3e-90 334.7 208 76.9
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 7.3e-90 334.7 213 77.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-89 334.0 208 76.0
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.1e-89 333.2 218 73.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.8e-89 332.8 224 74.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-89 332.8 224 74.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-88 330.9 213 76.5
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.8e-88 330.1 210 73.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.8e-88 330.1 208 77.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.3e-88 329.7 218 72.0
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-88 329.7 213 76.1
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 4.0e-88 328.9 213 76.1
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.0e-88 328.9 209 76.1
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.0e-88 328.9 209 76.1
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 5.2e-88 328.6 210 74.3
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.2e-87 327.4 219 74.0
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.2e-87 327.4 224 73.7
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.5e-87 327.0 233 67.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 9.9e-87 324.3 225 70.7
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.2e-86 323.2 235 70.2
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.9e-86 322.8 265 65.3
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.9e-86 322.8 274 62.4
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 3.8e-86 322.4 235 69.8
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.4e-86 321.6 231 70.6
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 8.4e-86 321.2 225 70.7
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.1e-85 320.9 235 69.4
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.4e-85 319.7 247 66.4
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.2e-85 319.3 209 74.6
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.1e-85 318.9 224 70.1
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 7.1e-85 318.2 212 71.2
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 7.1e-85 318.2 212 73.6
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 9.2e-85 317.8 226 69.5
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-84 317.4 252 64.7
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.1e-84 316.6 247 66.0
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 4.6e-84 315.5 235 67.7
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.0e-83 314.3 208 73.6
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.0e-83 314.3 232 69.0
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.3e-83 313.9 213 71.8
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.9e-83 312.4 224 68.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.9e-83 312.4 269 62.8
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.9e-83 312.4 232 68.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.3e-82 308.9 229 69.9
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.6e-82 308.5 269 62.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 5.6e-82 308.5 208 73.1
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.6e-82 307.8 225 69.8
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.2e-81 307.4 209 70.8
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.6e-81 307.0 263 62.4
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-81 306.6 219 66.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.1e-81 306.6 248 63.3
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.1e-81 306.6 239 66.1
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-81 306.2 219 66.2
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.8e-81 306.2 219 66.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.7e-81 305.4 288 58.0
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-80 304.3 219 65.8
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-80 304.3 219 65.8
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-80 304.3 219 65.8
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.1e-80 304.3 210 71.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 5.2e-80 302.0 231 66.2
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 6.9e-80 301.6 214 70.6
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.3e-78 297.4 171 84.2
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.8e-78 295.8 206 71.4
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-77 294.3 255 58.4
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.4e-77 293.9 208 70.7
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.4e-77 293.1 197 75.6
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.2e-77 292.7 211 68.2
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 4.2e-77 292.4 216 69.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 9.3e-77 291.2 263 58.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 6.6e-75 285.0 211 68.2
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.5e-74 283.1 179 76.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.7e-70 270.4 171 76.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.9e-66 256.9 233 60.9
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.4e-66 255.0 292 52.1
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 7.4e-66 255.0 195 67.2
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.6e-63 246.5 219 59.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.9e-62 243.0 195 62.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.9e-62 243.0 219 58.0
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-61 241.1 208 59.1
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.9e-59 232.6 137 84.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.1e-58 231.1 137 83.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-55 219.5 219 52.5
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.6e-52 209.1 134 79.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.3e-49 201.1 208 51.9
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.8e-49 199.1 260 45.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.7e-43 178.7 171 52.0
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.4e-40 171.0 173 55.5
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.0e-38 162.5 171 51.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 4.5e-31 139.4 105 63.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.3e-27 127.1 96 68.8
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.2e-15 88.2 69 56.5
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 5.0e-14 82.8 89 46.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 4.0e-11 73.2 68 52.9
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.6e-10 70.5 44 77.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 9.8e-10 68.6 60 55.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.1e-08 65.1 76 51.3
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.4e-08 63.9 40 75.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-07 61.6 73 46.6


User provided reference genes

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