Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 6.0e-126 454.1 222 100.0
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 1.7e-120 436.0 222 96.8
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 6.8e-29 131.7 191 46.6
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 7.6e-28 128.3 202 43.6
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 6.4e-27 125.2 200 44.5
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.4e-26 124.0 204 41.7
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 7.1e-26 121.7 200 43.0
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 2.7e-25 119.8 225 38.2
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 7.8e-25 118.2 215 38.1
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 5.1e-24 115.5 197 40.6
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 8.6e-24 114.8 225 37.8
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 1.9e-23 113.6 204 40.2
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 4.3e-23 112.5 197 40.6
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 5.6e-23 112.1 206 41.7
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.6e-22 110.5 200 39.5
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 4.7e-22 109.0 194 40.2
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.7e-22 109.0 194 37.1
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 8.1e-22 108.2 199 37.7
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.1e-21 107.8 201 38.8
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.1e-21 107.8 200 39.5
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.4e-21 106.7 203 36.9
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.0e-21 105.9 204 37.7
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 4.0e-21 105.9 203 36.9
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 6.9e-21 105.1 204 38.2
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 8.9e-21 104.8 185 41.1
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 8.9e-21 104.8 185 41.1
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.0e-20 103.6 214 37.9
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 3.4e-20 102.8 200 37.0
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 4.4e-20 102.4 200 38.5
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 4.4e-20 102.4 200 36.5
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 5.8e-20 102.1 205 37.6
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.7e-19 100.5 187 39.6
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 2.2e-19 100.1 207 38.2
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 2.2e-19 100.1 217 35.9
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.9e-19 99.8 200 37.0
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.8e-19 99.4 200 37.5
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 6.4e-19 98.6 194 37.6
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 8.4e-19 98.2 202 35.6
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.4e-18 97.4 195 37.4
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 1.4e-18 97.4 209 37.3
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.9e-18 97.1 237 34.6
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 2.4e-18 96.7 199 38.7
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.4e-18 96.7 195 36.4
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 3.2e-18 96.3 166 40.4
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 5.4e-18 95.5 196 37.8
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 7.1e-18 95.1 202 35.1
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 9.3e-18 94.7 199 38.2
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 1.6e-17 94.0 202 34.7
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 2.7e-17 93.2 204 34.8
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 2.7e-17 93.2 207 38.6
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 3.5e-17 92.8 204 34.8
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 4.6e-17 92.4 197 37.1
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 6.0e-17 92.0 194 35.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 7.8e-17 91.7 197 36.5
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.3e-16 90.9 208 34.1
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 1.7e-16 90.5 205 33.2
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.3e-16 90.1 174 40.8
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 6.6e-16 88.6 173 37.0
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 6.6e-16 88.6 193 33.7
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 8.7e-16 88.2 196 36.7
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.9e-15 87.0 162 39.5
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 1.3e-14 84.3 194 36.1
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 2.1e-14 83.6 191 36.1
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 3.6e-14 82.8 138 38.4
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 6.2e-14 82.0 133 39.1
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 1.4e-13 80.9 134 39.6
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 5.3e-13 79.0 198 33.8
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 5.3e-13 79.0 190 34.7
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.2e-12 77.8 178 34.8
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 1.5e-12 77.4 190 34.2
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.6e-12 76.6 191 32.5
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 3.4e-12 76.3 235 28.9
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 5.8e-12 75.5 191 34.0
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 5.8e-12 75.5 244 28.3
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.3e-11 74.3 201 30.8
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.3e-11 74.3 201 30.8
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 2.2e-11 73.6 191 29.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.1e-10 71.2 189 30.2
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.4e-10 70.9 192 32.8
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 7.1e-10 68.6 197 32.0
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 9.3e-10 68.2 197 32.0
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.2e-09 67.8 92 43.5
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.1e-09 67.0 113 38.1
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.7e-09 66.6 154 33.1
Medtr4g079340 Medicago truncatula HOM05D007287 ORTHO05D008965 6.0e-09 65.5 106 39.6
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 7.9e-09 65.1 76 51.3
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 7.9e-09 65.1 198 29.8
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 1.0e-08 64.7 157 33.1
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.9e-08 62.8 177 32.8
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.1e-07 61.2 164 33.5
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 3.3e-07 59.7 150 28.0
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 3.3e-07 59.7 178 33.7
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.3e-07 59.7 156 30.1
Lalb_Chr12g0210711 Lupinus albus HOM05D007287 ORTHO05D008965 4.3e-07 59.3 85 44.7
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 7.4e-07 58.5 150 26.7
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 1.3e-06 57.8 147 29.9
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.8e-06 56.6 99 35.4
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 3.6e-06 56.2 163 29.4
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 8.1e-06 55.1 180 31.1


User provided reference genes

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