Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.9e-300 1035.0 515 100.0
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 8.6e-293 1009.6 515 97.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.9e-230 800.4 523 76.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 9.1e-226 786.9 517 75.4
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.2e-223 778.1 518 74.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.2e-219 765.8 522 74.7
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.4e-218 763.1 517 74.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.6e-217 758.8 525 72.2
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.7e-216 756.1 518 72.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.1e-215 753.4 519 72.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.7e-214 748.8 518 71.4
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.4e-213 746.5 554 69.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.8e-213 746.1 528 71.8
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.9e-208 728.8 522 69.7
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.6e-206 723.0 530 67.7
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.5e-204 716.5 522 69.5
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.6e-204 715.7 528 66.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.7e-203 713.0 519 68.8
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.1e-202 710.3 528 66.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 3.5e-201 705.3 520 67.7
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.5e-201 705.3 529 66.4
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.5e-201 704.9 520 67.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 7.7e-201 704.1 520 68.5
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.3e-200 703.4 523 66.3
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-199 700.3 520 67.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 9.5e-199 697.2 526 67.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 8.0e-198 694.1 522 66.5
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.4e-197 693.3 527 64.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.9e-197 690.6 516 67.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.9e-197 690.6 516 67.2
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.5e-196 689.9 522 65.7
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.6e-196 689.1 538 64.3
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-196 689.1 523 65.2
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 4.4e-196 688.3 530 66.6
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.8e-196 687.2 523 65.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.2e-195 686.0 530 63.6
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.4e-194 682.6 538 63.2
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.4e-194 682.6 538 63.2
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-194 682.2 526 65.2
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.1e-194 681.8 516 66.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.1e-194 681.8 516 66.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.2e-194 680.6 528 64.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 9.2e-194 680.6 519 65.3
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.2e-193 680.2 540 63.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.2e-193 680.2 537 63.5
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.9e-193 677.9 522 64.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.3e-192 676.0 542 63.3
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.6e-192 674.5 528 64.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.5e-191 672.5 525 62.7
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.3e-191 672.2 555 61.3
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.3e-191 672.2 555 61.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.6e-191 671.4 528 64.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.6e-191 671.4 528 62.7
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 9.5e-191 670.6 548 60.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.2e-190 670.2 546 61.2
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 2.1e-190 669.5 532 61.7
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 8.0e-190 667.5 542 63.8
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 8.0e-190 667.5 550 60.2
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.0e-189 667.2 519 63.8
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 8.9e-189 664.1 535 61.3
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.2e-188 663.7 532 63.7
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.2e-188 663.7 523 64.1
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 3.4e-188 662.1 399 80.7
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 5.8e-188 661.4 533 63.0
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.5e-188 661.0 519 63.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.5e-188 661.0 524 63.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-187 659.8 538 62.6
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.2e-187 659.4 524 63.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 8.3e-187 657.5 537 63.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 8.3e-187 657.5 538 62.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.9e-186 656.4 523 64.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.2e-186 655.6 544 62.1
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 5.4e-186 654.8 556 61.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.4e-186 654.8 543 61.5
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 9.2e-186 654.1 550 62.5
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 9.2e-186 654.1 550 62.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.0e-185 652.9 533 62.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.7e-185 652.5 547 62.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.7e-185 652.5 524 62.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 6.0e-185 651.4 530 61.3
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 7.8e-185 651.0 539 62.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.0e-184 650.6 545 62.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.3e-184 650.2 523 61.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 3.0e-184 649.0 534 62.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-183 646.7 523 62.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.3e-183 644.4 523 61.6
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.7e-182 641.7 538 60.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 5.8e-180 634.8 506 62.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 7.5e-180 634.4 532 60.0
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.2e-178 627.5 534 59.7
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.6e-177 626.7 534 59.7
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.7e-177 625.9 534 59.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 6.0e-177 624.8 532 59.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.7e-176 623.2 524 60.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.3e-175 619.0 519 61.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 4.7e-174 615.1 533 61.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-173 614.0 523 58.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 8.9e-173 610.9 523 60.6
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.9e-173 610.9 521 59.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.3e-171 607.1 525 60.4
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 8.3e-171 604.4 518 59.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.4e-170 602.8 461 60.5
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.6e-169 600.1 465 62.4
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 7.8e-169 597.8 525 58.5
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.3e-167 592.4 413 68.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.6e-166 590.1 529 58.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 4.4e-164 582.0 518 55.6
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 9.6e-159 564.3 447 61.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.6e-156 556.2 452 62.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.9e-155 552.0 474 61.2
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.6e-152 541.6 389 66.6
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.3e-150 537.3 501 56.3
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-147 526.6 432 62.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.1e-143 514.2 297 81.8
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 4.8e-142 508.8 317 75.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.1e-137 493.4 317 71.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.3e-136 490.0 309 75.1
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.9e-128 462.6 317 67.5
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.5e-123 445.3 389 57.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.1e-119 434.5 479 45.5
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.7e-119 432.2 294 69.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.1e-111 407.9 521 44.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.0e-111 407.1 415 48.4
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.7e-107 394.0 238 78.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.2e-107 393.7 242 77.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.2e-106 389.4 265 70.2
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-96 358.2 526 44.7
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.2e-87 328.2 202 76.7
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.3e-83 313.9 344 50.6
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 6.1e-81 305.8 325 51.4
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 5.2e-80 302.8 206 69.9
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-77 294.7 278 54.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.6e-71 273.9 278 55.4
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.0e-67 261.9 166 75.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-55 221.1 257 50.6
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 4.9e-54 216.5 257 50.2
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.6e-52 211.5 222 53.2
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.1e-52 211.1 157 68.2
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 3.9e-51 206.8 161 61.5
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 3.9e-51 206.8 161 61.5
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-49 201.1 435 30.1
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-49 200.7 130 70.0
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.5e-44 183.7 109 78.9
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.5e-42 178.3 189 49.7
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 4.9e-38 163.3 171 51.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 8.4e-38 162.5 114 64.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 7.1e-37 159.5 269 38.3
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.9e-35 153.7 203 44.8
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 3.6e-33 147.1 269 37.5
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.0e-32 143.7 260 37.3
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.8e-31 139.8 170 43.5
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 7.6e-31 139.4 125 58.4
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 3.8e-30 137.1 230 37.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.0e-28 129.8 84 70.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.0e-28 129.8 84 70.2
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.9e-26 124.8 104 61.5
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.8e-25 120.2 171 42.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 6.9e-24 116.3 91 59.3
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.8e-22 110.5 92 62.0
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 6.7e-19 99.8 72 69.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-16 91.3 59 66.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.6e-12 78.6 90 41.1
arahy.Tifrunner.gnm1.ann1.ZT22EI Arachis hypogaea HOM05D000162 ORTHO05D000090 6.1e-12 76.6 42 85.7
arahy.Tifrunner.gnm1.ann1.S17QX5 Arachis hypogaea HOM05D000162 ORTHO05D000090 3.3e-10 70.9 41 82.9
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 8.2e-09 66.2 35 94.3
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 7.7e-07 59.7 67 46.3
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 7.7e-07 59.7 67 46.3


User provided reference genes

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