Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 0.0e+00 1237.2 613 100.0
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 0.0e+00 1206.8 613 97.7
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 2.7e-261 905.2 615 75.6
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 2.9e-255 885.2 610 74.6
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 1.4e-252 876.3 618 73.6
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 5.7e-251 870.9 611 73.8
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 8.2e-250 867.1 612 73.0
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 9.1e-249 863.6 612 73.7
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 7.2e-246 854.0 617 72.1
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.6e-243 845.5 609 71.9
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-239 833.2 586 72.2
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.4e-236 823.2 617 70.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.2e-236 821.2 595 70.8
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 8.3e-234 813.9 611 67.1
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 2.7e-224 782.3 620 63.9
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 1.0e-223 780.4 615 64.4
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.7e-223 779.6 605 65.3
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.6e-221 773.1 613 64.3
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 8.0e-221 770.8 583 66.4
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 6.8e-220 767.7 611 63.7
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.4e-217 759.2 628 61.9
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 3.5e-216 755.4 583 63.8
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 3.9e-215 751.9 591 62.8
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 5.0e-215 751.5 621 63.4
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 1.5e-214 750.0 579 65.8
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 2.5e-214 749.2 587 64.9
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 6.2e-213 744.6 611 62.4
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 2.3e-212 742.7 616 62.3
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 2.3e-212 742.7 588 63.1
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 5.2e-212 741.5 590 64.4
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-211 739.6 598 64.9
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 9.8e-211 737.3 583 63.1
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.7e-210 736.5 592 62.2
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.9e-210 735.7 588 63.9
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 9.2e-209 730.7 528 68.0
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.2e-208 730.3 588 63.1
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 2.7e-208 729.2 621 59.9
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 2.7e-208 729.2 608 61.0
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 2.7e-208 729.2 593 62.9
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.5e-208 728.8 618 61.7
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 4.6e-208 728.4 592 62.8
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.6e-208 728.4 592 62.8
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 6.0e-208 728.0 583 64.5
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 1.0e-207 727.2 610 59.5
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 1.0e-207 727.2 613 61.5
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.3e-207 726.9 613 59.4
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 6.6e-207 724.5 621 60.7
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 8.6e-207 724.2 621 61.0
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 8.6e-207 724.2 616 61.7
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.1e-206 723.8 594 61.6
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.9e-206 723.0 611 61.5
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 2.8e-205 719.2 620 60.2
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.4e-204 716.8 613 58.4
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 5.2e-204 714.9 612 62.3
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.5e-203 713.4 621 59.4
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 2.0e-203 713.0 594 61.1
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 2.6e-203 712.6 621 60.1
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 3.4e-203 712.2 597 60.5
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 5.8e-203 711.4 613 58.1
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 9.8e-203 710.7 616 60.2
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 1.3e-202 710.3 621 60.1
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 2.2e-202 709.5 617 60.1
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 2.9e-202 709.1 621 59.9
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 3.7e-202 708.8 618 60.2
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 6.4e-202 708.0 622 59.0
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.1e-201 707.2 607 59.6
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.4e-201 706.8 619 58.6
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.4e-201 706.8 600 60.7
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.1e-201 705.3 637 57.3
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 7.1e-201 704.5 612 58.7
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 9.2e-201 704.1 622 59.0
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 1.6e-200 703.4 576 61.8
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 2.7e-200 702.6 618 58.3
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 6.0e-200 701.4 615 58.4
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 6.0e-200 701.4 594 59.6
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 3.0e-199 699.1 589 59.9
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 3.0e-199 699.1 609 58.8
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 3.9e-199 698.7 581 62.0
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 1.5e-198 696.8 568 66.5
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.6e-197 693.3 557 63.4
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 3.4e-195 685.6 616 57.5
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 9.9e-195 684.1 624 56.9
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 4.9e-194 681.8 602 59.5
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 2.4e-193 679.5 581 59.2
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 7.1e-193 677.9 624 57.2
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 2.1e-192 676.4 605 58.3
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 1.5e-190 670.2 605 58.8
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 5.6e-190 668.3 651 53.8
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 5.8e-187 658.3 601 56.7
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.9e-186 656.0 639 55.2
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 1.9e-185 653.3 573 59.0
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 7.1e-185 651.4 617 54.9
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.6e-184 648.7 352 88.6
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 2.8e-181 639.4 559 57.6
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 4.0e-180 635.6 614 55.2
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.7e-178 630.2 559 59.7
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.3e-175 620.5 608 55.3
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 1.9e-174 616.7 609 52.2
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.6e-174 614.4 375 80.5
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 4.8e-173 612.1 593 55.5
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 6.9e-172 608.2 616 54.5
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.9e-169 600.1 389 77.9
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 4.2e-169 599.0 521 59.9
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 4.6e-168 595.5 600 52.5
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.5e-166 590.5 622 51.1
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 6.5e-162 575.1 618 51.6
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 7.9e-160 568.2 617 50.4
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 4.5e-155 552.4 445 62.9
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 7.2e-153 545.0 619 48.9
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.3e-151 540.8 344 75.3
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 3.1e-148 529.6 570 51.1
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.5e-142 510.8 542 50.2
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 1.4e-137 494.2 475 53.3
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-128 464.2 355 68.7
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.8e-127 460.7 435 54.0
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 5.0e-122 442.6 588 42.5
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 5.5e-113 412.5 610 39.7
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.7e-106 391.0 578 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 7.3e-105 385.6 569 40.2
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 8.0e-104 382.1 509 42.0
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 4.4e-86 323.2 356 50.6
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 7.8e-83 312.4 237 63.3
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 2.6e-70 270.8 186 75.3
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 4.4e-70 270.0 238 58.4
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 7.6e-70 269.2 233 58.4
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.3e-69 268.5 428 35.0
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 2.5e-57 227.6 216 55.1
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 4.3e-33 147.1 204 43.6
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.4e-31 141.4 147 46.9
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 3.2e-28 131.0 290 34.1
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 3.4e-22 110.9 84 65.5
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.6e-19 102.1 331 26.9
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 3.9e-18 97.4 49 87.8
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 3.3e-17 94.4 475 21.7
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.3e-16 92.4 224 36.2
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 5.0e-13 80.5 170 30.0
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 7.2e-12 76.6 100 50.0
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 5.7e-09 67.0 53 60.4


User provided reference genes

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