Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 0.0e+00 1261.9 672 100.0
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 0.0e+00 1232.6 672 97.5
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 4.6e-177 625.5 658 53.8
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 3.2e-170 602.8 657 54.2
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 4.6e-169 599.0 659 51.7
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 1.2e-161 574.3 657 52.1
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 2.8e-158 563.1 665 50.7
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 1.2e-148 531.2 664 50.0
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 1.2e-148 531.2 664 50.0
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.5e-143 514.2 652 48.3
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 6.5e-99 365.9 704 38.9
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 8.5e-99 365.5 724 38.1
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 8.5e-99 365.5 748 37.4
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 1.1e-98 365.2 731 36.7
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.5e-98 364.8 746 36.5
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 5.5e-98 362.8 668 41.8
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 7.2e-98 362.5 737 37.2
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 9.4e-98 362.1 717 37.2
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.7e-97 360.5 737 37.4
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 3.6e-97 360.1 727 37.1
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 3.6e-97 360.1 616 41.4
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.3e-96 357.5 696 39.8
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 2.0e-95 354.4 625 40.0
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 2.6e-95 354.0 705 37.6
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.3e-95 353.6 703 37.7
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.7e-94 351.3 702 37.7
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.7e-94 351.3 711 37.3
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.7e-94 351.3 721 37.3
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.7e-94 350.1 713 40.1
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 7.0e-93 345.9 770 35.7
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.2e-90 337.0 622 39.7
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 5.5e-90 336.3 573 38.6
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.6e-89 334.7 511 41.5
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.0e-88 332.0 799 35.4
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 6.8e-88 329.3 519 41.4
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 6.8e-88 329.3 548 42.2
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.0e-87 327.8 756 34.5
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 1.7e-86 324.7 723 34.6
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 2.2e-86 324.3 735 35.1
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 2.8e-86 323.9 621 38.5
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 4.8e-86 323.2 734 35.6
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 9.1e-85 318.9 500 43.6
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 3.5e-84 317.0 760 34.5
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 7.7e-84 315.8 740 35.0
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 1.7e-83 314.7 619 38.6
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 2.3e-83 314.3 525 40.0
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 2.9e-83 313.9 619 38.1
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 3.8e-83 313.5 616 37.5
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 8.6e-83 312.4 634 38.0
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.5e-82 310.8 633 35.9
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 3.3e-82 310.5 498 42.2
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 4.2e-82 310.1 597 37.4
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.6e-81 308.1 586 37.0
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 2.8e-81 307.4 617 37.6
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 3.6e-81 307.0 627 35.9
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.4e-80 305.1 627 36.8
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 4.0e-80 303.5 608 36.7
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 5.2e-80 303.1 608 37.7
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.2e-79 302.0 479 42.6
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.2e-79 302.0 335 50.1
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 9.8e-79 298.9 613 36.9
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 9.8e-79 298.9 609 37.8
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 1.3e-78 298.5 527 38.5
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 2.2e-78 297.7 594 36.5
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 8.3e-78 295.8 617 37.0
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.1e-77 293.9 537 38.7
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 9.2e-77 292.4 715 34.1
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.2e-76 292.0 622 37.0
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.6e-76 291.6 615 36.1
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 1.0e-75 288.9 493 39.8
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.3e-75 287.7 607 36.4
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 5.0e-75 286.6 346 50.9
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 6.6e-75 286.2 564 36.9
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 1.1e-74 285.4 601 35.8
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.1e-74 285.4 568 37.0
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.1e-74 285.4 569 36.9
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.9e-74 284.6 471 39.3
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 4.3e-74 283.5 443 40.6
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 7.3e-74 282.7 680 34.3
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 2.2e-70 271.2 560 36.8
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.0e-67 260.8 407 42.0
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.1e-66 258.8 525 36.4
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 1.1e-66 258.8 384 42.7
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 1.6e-65 255.0 492 34.8
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 2.3e-59 234.6 420 37.9
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 9.5e-58 229.2 661 31.6
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 8.1e-57 226.1 632 31.5
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 1.9e-53 214.9 296 46.6
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 3.5e-52 210.7 533 32.6
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 7.3e-50 203.0 342 39.2
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 9.5e-50 202.6 420 35.5
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 3.1e-48 197.6 595 31.8
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 6.0e-44 183.3 520 30.2
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 7.8e-44 183.0 542 30.8
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 8.1e-41 172.9 530 30.8
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.4e-40 172.2 550 28.0
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 9.9e-39 166.0 435 33.8
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 4.9e-38 163.7 285 38.6
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.1e-37 162.5 527 28.7
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.0e-35 156.0 394 32.7
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 3.0e-35 154.5 352 43.8
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 6.6e-35 153.3 240 43.8
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.7e-30 138.7 226 41.2
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.1e-29 136.0 375 30.7
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.9e-29 135.2 245 39.6
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 4.2e-29 134.0 183 44.8
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 8.7e-27 126.3 185 45.9
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 3.3e-26 124.4 226 44.7
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 7.4e-26 123.2 258 34.5
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 3.7e-25 120.9 301 32.9
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.3e-19 102.4 176 40.9
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.5e-18 98.2 180 38.9
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 2.5e-18 98.2 199 36.2
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 2.4e-16 91.7 304 29.6
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 1.5e-15 89.0 75 60.0
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 1.1e-10 72.8 144 40.3
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 7.4e-10 70.1 156 35.9
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 2.0e-07 62.0 48 68.8
TPR.G31594 Trifolium pratense HOM05D006063 ORTHO05D000023 7.7e-07 60.1 87 44.8


User provided reference genes

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