Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JSVJ2H Arachis hypogaea HOM05D001336 ORTHO05D001211 2.2e-109 399.1 214 100.0
TPR.G17042 Trifolium pratense HOM05D001336 ORTHO05D001211 4.6e-22 109.0 77 76.6
Phvul.004G093900 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 7.8e-22 108.2 75 72.0
Glyma.20G167900 Glycine max HOM05D001336 ORTHO05D001211 1.0e-21 107.8 75 76.0
Psat6g200840 Pisum sativum HOM05D001336 ORTHO05D001211 1.0e-21 107.8 77 75.3
Ca_10679_v3 Cicer arietinum L. HOM05D001336 ORTHO05D001211 1.3e-21 107.5 76 72.4
VMungo0720G3164 Vigna mungo HOM05D001336 ORTHO05D001211 1.3e-21 107.5 75 76.0
Phvul.007G080800 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 1.7e-21 107.1 75 76.0
arahy.Tifrunner.gnm1.ann1.T0IQXW Arachis hypogaea HOM05D001336 ORTHO05D001211 2.3e-21 106.7 60 93.3
Lj5g0024627 Lotus japonicus HOM05D001336 ORTHO05D001211 6.6e-21 105.1 76 73.7
Glyma.02G081000 Glycine max HOM05D001336 ORTHO05D001211 1.5e-20 104.0 75 72.0
Glyma.10G224000 Glycine max HOM05D001336 ORTHO05D001211 2.5e-20 103.2 75 73.3
Medtr1g098640 Medicago truncatula HOM05D001336 ORTHO05D001211 3.3e-20 102.8 77 71.4
Psat6g238240 Pisum sativum HOM05D001336 ORTHO05D001211 5.6e-20 102.1 84 69.0
Lalb_Chr21g0305511 Lupinus albus HOM05D001336 ORTHO05D001211 1.6e-19 100.5 74 74.3
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 2.1e-19 100.1 58 94.8
arahy.Tifrunner.gnm1.ann1.7NV4RJ Arachis hypogaea HOM05D001336 ORTHO05D001211 3.6e-19 99.4 64 82.8
arahy.Tifrunner.gnm1.ann1.X8HV17 Arachis hypogaea HOM05D001336 ORTHO05D001211 3.6e-19 99.4 64 82.8
arahy.Tifrunner.gnm1.ann1.GJL8UB Arachis hypogaea HOM05D001336 ORTHO05D001211 4.7e-19 99.0 58 93.1
Lj2g0005253 Lotus japonicus HOM05D001336 ORTHO05D001211 1.4e-18 97.4 76 67.1
Dinv25873 Davidia involucrata HOM05D001336 ORTHO05D001211 3.4e-17 92.8 79 63.3
Nitab4.5_0002497g0010 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.7e-16 90.5 78 61.5
Sabra02G0053200 Salix brachista HOM05D001336 ORTHO05D001211 1.7e-16 90.5 84 58.3
AUR62028490 Chenopodium quinoa HOM05D001336 ORTHO05D001211 2.9e-16 89.7 84 56.0
Cpa.g.sc21.209 Carica papaya HOM05D001336 ORTHO05D001211 3.8e-16 89.4 77 61.0
Prupe.8G032700 Prunus persica HOM05D001336 ORTHO05D001211 3.8e-16 89.4 76 61.8
CSS0031244 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 4.9e-16 89.0 79 59.5
AUR62026689 Chenopodium quinoa HOM05D001336 ORTHO05D001211 4.9e-16 89.0 84 57.1
arahy.Tifrunner.gnm1.ann1.WR5QKV Arachis hypogaea HOM05D001515 ORTHO05D001454 6.4e-16 88.6 53 88.7
Ciclev10000559m.g Citrus clementina HOM05D001336 ORTHO05D001211 8.4e-16 88.2 77 62.3
DCAR_014438 Daucus carota HOM05D001336 ORTHO05D001211 8.4e-16 88.2 80 58.8
Nitab4.5_0001062g0110 Nicotiana tabacum HOM05D001336 ORTHO05D001211 8.4e-16 88.2 77 61.0
AUR62013600 Chenopodium quinoa HOM05D001336 ORTHO05D001211 1.4e-15 87.4 77 58.4
Solyc04g071540.4 Solanum lycopersicum HOM05D001336 ORTHO05D001211 1.4e-15 87.4 78 57.7
Sopen04g027520 Solanum pennellii HOM05D001336 ORTHO05D001211 1.4e-15 87.4 78 57.7
CiPaw.15G015400 Carya illinoinensis HOM05D001336 ORTHO05D001211 7.1e-15 85.1 77 59.7
BcaC08g42815 Brassica carinata HOM05D001336 ORTHO05D001211 9.2e-15 84.7 76 65.8
C06p00270 Brassica napus HOM05D001336 ORTHO05D001211 9.2e-15 84.7 76 65.8
FvH4_2g13560 Fragaria vesca HOM05D001336 ORTHO05D001211 9.2e-15 84.7 76 60.5
TAR381G0385 Trochodendron aralioides HOM05D001336 ORTHO05D001211 9.2e-15 84.7 77 61.0
Lj7A375T59 Lonicera japonica HOM05D001336 ORTHO05D001211 1.2e-14 84.3 79 62.0
A10p07800 Brassica napus HOM05D001336 ORTHO05D001211 2.1e-14 83.6 78 65.4
BraSC36t46022Z Brassica rapa HOM05D001336 ORTHO05D001211 2.1e-14 83.6 78 65.4
Gohir.A05G244000 Gossypium hirsutum HOM05D001336 ORTHO05D001211 2.1e-14 83.6 77 58.4
Gohir.D05G245000 Gossypium hirsutum HOM05D001336 ORTHO05D001211 2.1e-14 83.6 77 58.4
Gorai.009G254800 Gossypium raimondii HOM05D001336 ORTHO05D001211 2.1e-14 83.6 77 58.4
HanXRQChr10g0278951 Helianthus annuus HOM05D001336 ORTHO05D001211 2.1e-14 83.6 78 53.8
HanXRQChr10g0278961 Helianthus annuus HOM05D001336 ORTHO05D001211 2.1e-14 83.6 78 53.8
SalBow7G2140 Salvia bowleyana HOM05D001336 ORTHO05D001211 2.1e-14 83.6 77 54.5
Haze_17761 Corylus avellana HOM05D001336 ORTHO05D001211 2.7e-14 83.2 76 60.5
MBI09_g38855_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 2.7e-14 83.2 75 61.3
Aqoxy5G02066 Aquilegia oxysepala HOM05D001336 ORTHO05D001211 3.5e-14 82.8 76 61.8
Duzib116G0488 Durio zibethinus HOM05D001336 ORTHO05D001211 3.5e-14 82.8 77 59.7
Potri.005G193100 Populus trichocarpa HOM05D001336 ORTHO05D001211 3.5e-14 82.8 76 60.5
RcHm_v2.0_Chr6g0275171 Rosa chinensis HOM05D001336 ORTHO05D001211 3.5e-14 82.8 76 59.2
Sabra05G0147600 Salix brachista HOM05D001336 ORTHO05D001211 3.5e-14 82.8 79 58.2
GSVIVG01034544001 Vitis vinifera HOM05D001336 ORTHO05D001211 3.5e-14 82.8 78 59.0
MSTRG.1090 Avicennia marina HOM05D001336 ORTHO05D001211 4.6e-14 82.4 77 58.4
MELO3C008339.2 Cucumis melo HOM05D001336 ORTHO05D001211 4.6e-14 82.4 79 57.0
Thecc.08G153900 Theobroma cacao HOM05D001336 ORTHO05D001211 4.6e-14 82.4 77 58.4
Actinidia04760 Actinidia chinensis HOM05D001336 ORTHO05D001211 6.0e-14 82.0 76 59.2
COL.COLO4_29848 Corchorus olitorius HOM05D001336 ORTHO05D001211 6.0e-14 82.0 77 59.7
Dinv41075 Davidia involucrata HOM05D001336 ORTHO05D001211 6.0e-14 82.0 76 57.9
Os01g0867600 Oryza sativa ssp. japonica HOM05D001336 ORTHO05D001211 6.0e-14 82.0 78 56.4
Sed0022213 Sechium edule HOM05D001336 ORTHO05D001211 6.0e-14 82.0 78 59.0
arahy.Tifrunner.gnm1.ann1.FA0H5W Arachis hypogaea HOM05D001515 ORTHO05D001454 1.0e-13 81.3 53 81.1
Nn5g28761 Nelumbo nucifera HOM05D001336 ORTHO05D001211 1.0e-13 81.3 75 57.3
Atru.chr13.2089 Acer truncatum HOM05D001336 ORTHO05D001211 1.3e-13 80.9 77 57.1
BcaB07g33980 Brassica carinata HOM05D001336 ORTHO05D001211 1.7e-13 80.5 77 63.6
Cc10_g14450 Coffea canephora HOM05D001336 ORTHO05D001211 1.7e-13 80.5 77 55.8
Potri.002G067100 Populus trichocarpa HOM05D001336 ORTHO05D001211 1.7e-13 80.5 76 57.9
SGA_v2.0_scaffold48G18005 Striga asiatica HOM05D001336 ORTHO05D001211 1.7e-13 80.5 76 59.2
CANSAT25G1624 Cannabis sativa HOM05D001336 ORTHO05D001211 2.3e-13 80.1 75 58.7
Eucgr.F02699 Eucalyptus grandis HOM05D001336 ORTHO05D001211 2.3e-13 80.1 76 56.6
MD10G1026500 Malus domestica HOM05D001336 ORTHO05D001211 2.3e-13 80.1 80 57.5
PGR042G0120 Punica granatum HOM05D001336 ORTHO05D001211 2.3e-13 80.1 76 57.9
Sc02g0003980 Simmondsia chinensis HOM05D001336 ORTHO05D001211 2.3e-13 80.1 76 53.9
Ah.05g167990 Amaranthus hybridus HOM05D001336 ORTHO05D001211 3.0e-13 79.7 76 56.6
TWI34G1494 Tripterygium wilfordii HOM05D001336 ORTHO05D001211 3.9e-13 79.3 76 59.2
vmacro01458 Vaccinium macrocarpon HOM05D001336 ORTHO05D001211 3.9e-13 79.3 77 57.1
Glyma.17G119100 Glycine max HOM05D001336 ORTHO05D001211 5.1e-13 79.0 63 71.4
Sp1g32510 Schrenkiella parvula HOM05D001336 ORTHO05D001211 5.1e-13 79.0 77 62.3
CsaV3_6G005200 Cucumis sativus L. HOM05D001336 ORTHO05D001211 6.6e-13 78.6 78 59.0
MD05G1027200 Malus domestica HOM05D001336 ORTHO05D001211 6.6e-13 78.6 76 56.6
HPP92_001990 Vanilla planifolia HOM05D001336 ORTHO05D001211 6.6e-13 78.6 76 56.6
QL02p038960 Quercus lobata HOM05D001336 ORTHO05D001211 8.6e-13 78.2 77 57.1
unitig_82.g27123 Utricularia gibba HOM05D001336 ORTHO05D001211 1.9e-12 77.0 75 56.0
Zm00001eb146680 Zea mays HOM05D001336 ORTHO05D001211 2.5e-12 76.6 79 55.7
ClCG08G007010 Citrullus lanatus HOM05D001336 ORTHO05D001211 4.3e-12 75.9 70 60.0
Oeu046043.1 Olea europaea HOM05D001336 ORTHO05D001211 4.3e-12 75.9 79 53.2
THA.LOC104803035 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 4.3e-12 75.9 77 61.0
Aa31LG6G9890 Aethionema arabicum HOM05D001336 ORTHO05D001211 5.6e-12 75.5 77 58.4
ECA246G4709 Erigeron canadensis HOM05D001336 ORTHO05D001211 7.3e-12 75.1 76 52.6
Carub.0001s3461 Capsella rubella HOM05D001336 ORTHO05D001211 4.7e-11 72.4 77 61.0
Thhalv10005442m.g Eutrema salsugineum HOM05D001336 ORTHO05D001211 6.2e-11 72.0 77 57.1
ATR0820G028 Amborella trichopoda HOM05D001336 ORTHO05D000153 8.1e-11 71.6 75 52.0
AT1G43620 Arabidopsis thaliana HOM05D001336 ORTHO05D001211 4.0e-10 69.3 77 58.4
AL1G51660 Arabidopsis lyrata HOM05D001336 ORTHO05D001211 8.9e-10 68.2 77 58.4
FAN24G0876 Fragaria x ananassa HOM05D001336 ORTHO05D001211 1.2e-09 67.8 64 59.4
FAN27G1886 Fragaria x ananassa HOM05D001336 ORTHO05D001211 1.2e-09 67.8 64 59.4
CARHR035650 Cardamine hirsuta HOM05D001336 ORTHO05D001211 1.5e-09 67.4 77 55.8
FAN15G2668 Fragaria x ananassa HOM05D001336 ORTHO05D001211 3.4e-09 66.2 64 59.4
Peaxi162Scf00599g00218 Petunia axillaris HOM05D001336 ORTHO05D001211 5.8e-09 65.5 64 56.2
Manes.18G092800 Manihot esculenta HOM05D001336 ORTHO05D001211 9.9e-09 64.7 75 54.7
EL10Ac1g01563 Beta vulgaris HOM05D001336 ORTHO05D001211 1.3e-08 64.3 65 50.8
Lsat_1_v5_gn_6_100401 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-08 64.3 64 54.7
SalBow3G4149 Salvia bowleyana HOM05D001336 ORTHO05D001211 2.2e-08 63.5 78 47.4
CDE11G0011 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 1.9e-07 60.5 75 44.0
CDE05G3579 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 2.4e-07 60.1 75 42.7
Pp3c26_4700 Physcomitrium patens HOM05D001336 ORTHO05D001211 4.2e-07 59.3 83 43.4
SEGI_02555 Sequoiadendron giganteum HOM05D001336 ORTHO05D001211 7.1e-07 58.5 74 40.5
Os07g0419500 Oryza sativa ssp. japonica HOM05D001336 ORTHO05D001211 2.1e-06 57.0 72 45.8
MELO3C010080.2 Cucumis melo HOM05D001336 ORTHO05D001211 2.7e-06 56.6 72 41.7
MBI07_g19558_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 3.5e-06 56.2 77 46.8
DCAR_005506 Daucus carota HOM05D001336 ORTHO05D001211 4.6e-06 55.8 78 41.0
Hund17443 Selenicereus undatus HOM05D001336 ORTHO05D001211 4.6e-06 55.8 65 49.2
Ah.05g167910 Amaranthus hybridus HOM05D001336 ORTHO05D001211 7.8e-06 55.1 67 46.3
Pp3c10_2210 Physcomitrium patens HOM05D001336 ORTHO05D001211 7.8e-06 55.1 88 37.5
Pp3c4_26740 Physcomitrium patens HOM05D001336 ORTHO05D001211 7.8e-06 55.1 81 40.7
unitig_62.g23553 Utricularia gibba HOM05D001336 ORTHO05D001211 7.8e-06 55.1 76 46.1
HPP92_013764 Vanilla planifolia HOM05D001336 ORTHO05D001211 7.8e-06 55.1 78 43.6


User provided reference genes

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