Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.3e-128 462.2 233 100.0
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 5.7e-127 457.6 234 99.6
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.7e-115 419.5 233 90.1
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 3.2e-114 415.2 236 89.0
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 3.6e-113 411.8 233 88.0
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 3.6e-113 411.8 233 87.6
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 3.6e-113 411.8 236 87.3
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 4.7e-113 411.4 233 88.8
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 5.2e-112 407.9 233 88.0
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 8.8e-112 407.1 233 89.3
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.0e-111 406.0 231 87.9
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 2.0e-111 406.0 234 88.5
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 5.7e-111 404.4 236 85.6
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.3e-110 403.3 226 88.5
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 1.7e-110 402.9 236 85.2
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 2.2e-110 402.5 233 86.3
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 4.9e-110 401.4 231 87.4
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 8.3e-110 400.6 238 84.9
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 8.3e-110 400.6 238 85.3
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 8.3e-110 400.6 231 86.6
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 1.1e-109 400.2 233 85.4
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 1.4e-109 399.8 233 84.5
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 1.4e-109 399.8 231 85.7
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 1.8e-109 399.4 233 85.8
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.4e-109 399.1 233 84.5
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 3.1e-109 398.7 239 84.9
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 3.1e-109 398.7 233 84.1
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 5.4e-109 397.9 234 83.8
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 7.0e-109 397.5 232 84.9
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 2.0e-108 396.0 233 83.3
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.7e-108 395.6 233 84.5
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 4.5e-108 394.8 233 82.0
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 4.5e-108 394.8 241 81.3
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 4.5e-108 394.8 233 83.3
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 5.9e-108 394.4 233 84.5
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.9e-107 392.1 234 84.2
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.9e-107 392.1 231 85.3
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 3.8e-107 391.7 233 81.5
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.8e-107 391.7 233 81.5
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 3.8e-107 391.7 233 82.8
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 5.0e-107 391.3 233 81.1
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 6.6e-107 391.0 233 81.5
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 8.6e-107 390.6 233 83.7
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 8.6e-107 390.6 233 82.8
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.6e-107 390.6 233 81.1
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.6e-107 390.6 233 81.1
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 8.6e-107 390.6 235 83.0
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.1e-106 390.2 233 83.7
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-106 390.2 233 80.7
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 1.1e-106 390.2 240 83.3
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 3.3e-106 388.7 233 82.4
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 3.3e-106 388.7 232 82.8
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 9.5e-106 387.1 233 82.0
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 9.5e-106 387.1 233 82.0
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 3.6e-105 385.2 236 83.1
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 4.7e-105 384.8 248 80.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 4.7e-105 384.8 235 82.1
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 8.0e-105 384.0 239 81.2
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.4e-104 383.3 231 82.7
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.8e-104 382.9 239 81.2
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 8.9e-104 380.6 234 80.3
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 8.9e-104 380.6 234 81.6
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.2e-103 380.2 237 78.5
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 2.0e-103 379.4 231 83.5
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 2.0e-103 379.4 234 81.2
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 7.5e-103 377.5 225 82.2
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 9.8e-103 377.1 231 81.8
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 1.7e-102 376.3 240 77.5
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 1.7e-102 376.3 233 80.7
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 2.2e-102 375.9 239 79.1
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 2.2e-102 375.9 225 81.8
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 4.9e-102 374.8 233 79.8
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 1.1e-101 373.6 232 78.9
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.1e-101 373.6 225 80.9
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 3.2e-101 372.1 238 77.3
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.7e-100 369.0 234 77.8
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 4.6e-100 368.2 233 80.7
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.3e-99 366.7 240 75.8
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.9e-99 365.2 240 76.7
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 3.3e-98 362.1 233 76.4
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.3e-98 362.1 221 79.2
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 7.3e-98 360.9 230 77.4
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 7.3e-98 360.9 233 75.5
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 1.2e-97 360.1 230 75.7
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 1.2e-97 360.1 230 75.7
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.1e-97 359.4 230 77.4
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 2.8e-97 359.0 233 74.7
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 2.8e-97 359.0 225 78.2
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 3.6e-97 358.6 224 79.0
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 4.7e-97 358.2 230 77.0
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 4.7e-97 358.2 230 77.0
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 8.0e-97 357.5 231 75.8
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.0e-96 357.1 230 75.7
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.4e-96 356.7 233 75.1
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 1.8e-96 356.3 231 75.3
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.8e-96 356.3 238 77.7
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.3e-96 355.9 231 75.8
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 3.1e-96 355.5 233 74.7
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 5.2e-96 354.8 233 78.1
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 6.8e-96 354.4 230 75.2
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 4.4e-95 351.7 225 77.8
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 4.9e-94 348.2 234 75.2
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 8.3e-94 347.4 230 73.9
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.2e-93 345.5 233 76.8
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.2e-92 343.6 304 61.5
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.6e-92 343.2 230 73.9
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 3.5e-92 342.0 256 67.6
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 4.6e-92 341.7 325 58.5
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 7.8e-92 340.9 229 72.5
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 1.5e-90 336.7 232 74.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 6.2e-89 331.3 187 85.6
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 6.2e-89 331.3 233 73.0
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 2.6e-87 325.9 225 68.9
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 6.4e-86 321.2 233 68.2
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 8.3e-86 320.9 226 66.8
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 5.4e-85 318.2 226 65.9
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.6e-84 316.6 192 79.2
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 3.5e-84 315.5 230 68.3
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 3.5e-84 315.5 230 68.7
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 5.1e-83 311.6 191 78.0
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.9e-82 309.7 198 77.8
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 2.1e-81 306.2 198 76.3
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 5.2e-80 301.6 238 67.2
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 1.2e-79 300.4 227 62.1
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.5e-71 273.5 168 79.8
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 2.2e-70 269.6 197 67.5
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 7.3e-66 254.6 163 77.9
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.4e-64 249.6 230 59.6
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 3.1e-56 222.6 218 51.4
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 5.8e-55 218.4 150 67.3
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 5.1e-43 178.7 118 69.5
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 6.5e-38 161.8 195 40.0
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 6.1e-36 155.2 105 76.2
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 2.2e-33 146.7 105 73.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 3.4e-23 112.8 209 33.5
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 8.2e-09 65.1 72 44.4


User provided reference genes

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