Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JG44AF Arachis hypogaea HOM05D006337 ORTHO05D008050 0.0e+00 1174.5 602 100.0
arahy.Tifrunner.gnm1.ann1.T92ZT6 Arachis hypogaea HOM05D006337 ORTHO05D008050 0.0e+00 1166.0 602 99.3
Glyma.10G146600 Glycine max HOM05D006337 ORTHO05D008050 2.7e-269 931.8 602 81.1
Lj5g0023698 Lotus japonicus HOM05D006337 ORTHO05D008050 5.0e-268 927.5 602 81.4
Ca_10177_v3 Cicer arietinum L. HOM05D006337 ORTHO05D008050 2.0e-264 915.6 604 79.6
Phvul.007G201800 Phaseolus vulgaris HOM05D006337 ORTHO05D008050 3.9e-260 901.4 598 78.6
Lalb_Chr06g0167461 Lupinus albus HOM05D006337 ORTHO05D008050 1.6e-258 896.0 607 78.7
Psat6g152760 Pisum sativum HOM05D006337 ORTHO05D008050 4.7e-258 894.4 605 78.8
VMungo0720G2751 Vigna mungo HOM05D006337 ORTHO05D008050 2.3e-257 892.1 601 78.2
TPR.G2638 Trifolium pratense HOM05D006337 ORTHO05D008050 1.6e-250 869.4 607 77.3
Medtr1g084140 Medicago truncatula HOM05D006337 ORTHO05D008050 1.5e-248 862.8 603 77.1
Thecc.05G323900 Theobroma cacao HOM05D006337 ORTHO05D008050 1.6e-229 799.7 603 70.1
Cpa.g.sc48.168 Carica papaya HOM05D006337 ORTHO05D008050 2.8e-226 788.9 601 69.1
Prupe.6G312300 Prunus persica HOM05D006337 ORTHO05D008050 1.4e-225 786.6 595 70.8
FvH4_6g07510 Fragaria vesca HOM05D006337 ORTHO05D008050 5.8e-224 781.2 570 71.6
FAN14G3073 Fragaria x ananassa HOM05D006337 ORTHO05D008050 5.8e-224 781.2 570 71.6
FAN02G2852 Fragaria x ananassa HOM05D006337 ORTHO05D008050 6.4e-223 777.7 570 70.9
Gohir.D13G115300 Gossypium hirsutum HOM05D006337 ORTHO05D008050 3.2e-222 775.4 577 70.0
RcHm_v2.0_Chr3g0457221 Rosa chinensis HOM05D006337 ORTHO05D008050 4.2e-222 775.0 570 71.1
MD04G1193000 Malus domestica HOM05D006337 ORTHO05D008050 5.5e-222 774.6 602 68.8
COL.COLO4_05544 Corchorus olitorius HOM05D006337 ORTHO05D008050 1.2e-221 773.5 580 70.9
Gohir.A08G205300 Gossypium hirsutum HOM05D006337 ORTHO05D008050 1.2e-221 773.5 584 69.2
Eucgr.L00261 Eucalyptus grandis HOM05D006337 ORTHO05D008050 2.1e-221 772.7 573 69.5
Gorai.004G236200 Gossypium raimondii HOM05D006337 ORTHO05D008050 2.1e-221 772.7 581 69.4
FAN09G0993 Fragaria x ananassa HOM05D006337 ORTHO05D008050 2.7e-221 772.3 570 70.9
Gorai.013G129700 Gossypium raimondii HOM05D006337 ORTHO05D008050 2.7e-221 772.3 575 69.7
Gohir.D08G222400 Gossypium hirsutum HOM05D006337 ORTHO05D008050 3.5e-221 771.9 581 69.2
MD12G1205200 Malus domestica HOM05D006337 ORTHO05D008050 3.5e-221 771.9 598 69.6
Potri.005G012900 Populus trichocarpa HOM05D006337 ORTHO05D008050 1.0e-220 770.4 600 67.8
QL03p014086 Quercus lobata HOM05D006337 ORTHO05D008050 1.8e-220 769.6 602 67.8
Ciclev10000649m.g Citrus clementina HOM05D006337 ORTHO05D008050 1.9e-219 766.1 584 69.5
Gohir.A13G112400 Gossypium hirsutum HOM05D006337 ORTHO05D008050 1.9e-219 766.1 581 69.4
Manes.08G110700 Manihot esculenta HOM05D006337 ORTHO05D008050 1.9e-219 766.1 598 68.6
CANSAT54G1309 Cannabis sativa HOM05D006337 ORTHO05D008050 3.3e-219 765.4 599 68.1
TAR362G0469 Trochodendron aralioides HOM05D006337 ORTHO05D008050 3.3e-219 765.4 587 67.0
Dinv30899 Davidia involucrata HOM05D006337 ORTHO05D008050 5.6e-219 764.6 583 68.8
CSS0010424 Camellia sinensis var. sinensis HOM05D006337 ORTHO05D008050 9.6e-219 763.8 594 68.0
Atru.chr2.356 Acer truncatum HOM05D006337 ORTHO05D008050 1.1e-217 760.4 606 67.3
PGR083G2894 Punica granatum HOM05D006337 ORTHO05D008050 2.0e-216 756.1 573 69.3
THA.LOC104821740 Tarenaya hassleriana HOM05D006337 ORTHO05D008050 6.0e-213 744.6 577 68.1
Lj5C328G3 Lonicera japonica HOM05D006337 ORTHO05D008050 7.9e-213 744.2 570 68.6
MELO3C004177.2 Cucumis melo HOM05D006337 ORTHO05D008050 1.0e-212 743.8 580 68.4
TWI56G1055 Tripterygium wilfordii HOM05D006337 ORTHO05D008050 3.3e-211 738.8 584 67.1
Haze_04055 Corylus avellana HOM05D006337 ORTHO05D008050 4.3e-211 738.4 602 65.9
Cc02_g35170 Coffea canephora HOM05D006337 ORTHO05D008050 3.7e-210 735.3 596 67.1
Hma1.2p1_0008F-1.1_g005550 Hydrangea macrophylla HOM05D006337 ORTHO05D008050 3.1e-209 732.3 581 67.5
Sc09g0002620 Simmondsia chinensis HOM05D006337 ORTHO05D008050 1.2e-208 730.3 579 66.5
CsaV3_2G007160 Cucumis sativus L. HOM05D006337 ORTHO05D008050 3.4e-208 728.8 580 68.1
Nitab4.5_0001338g0110 Nicotiana tabacum HOM05D006337 ORTHO05D008050 5.8e-208 728.0 587 66.6
THA.LOC104802775 Tarenaya hassleriana HOM05D006337 ORTHO05D008050 1.0e-207 727.2 578 67.8
Migut.B00957 Erythranthe guttata HOM05D006337 ORTHO05D008050 2.2e-207 726.1 597 64.5
Ah.03g134550 Amaranthus hybridus HOM05D006337 ORTHO05D008050 6.5e-207 724.5 601 64.1
Sed0024424 Sechium edule HOM05D006337 ORTHO05D008050 1.6e-205 719.9 604 65.6
PSO210G5840 Papaver somniferum HOM05D006337 ORTHO05D008050 2.1e-205 719.5 599 63.1
PSO761G0398 Papaver somniferum HOM05D006337 ORTHO05D008050 2.1e-205 719.5 605 62.6
MBI19_g03243_MAGBIO Magnolia biondii HOM05D006337 ORTHO05D008050 4.6e-205 718.4 541 68.6
Sabra05G0009100 Salix brachista HOM05D006337 ORTHO05D008050 6.1e-205 718.0 648 60.8
AUR62000385 Chenopodium quinoa HOM05D006337 ORTHO05D008050 7.9e-205 717.6 568 66.2
Nn4g25566 Nelumbo nucifera HOM05D006337 ORTHO05D008050 7.9e-205 717.6 588 63.9
ClCG02G014850 Citrullus lanatus HOM05D006337 ORTHO05D008050 3.0e-204 715.7 610 64.4
Sabra05G0020500 Salix brachista HOM05D006337 ORTHO05D008050 3.0e-204 715.7 657 60.1
Nn3g21731 Nelumbo nucifera HOM05D006337 ORTHO05D008050 1.1e-203 713.8 586 64.2
GSVIVG01031249001 Vitis vinifera HOM05D006337 ORTHO05D008050 1.9e-203 713.0 567 66.3
Sed0025162 Sechium edule HOM05D006337 ORTHO05D008050 4.3e-203 711.8 569 66.3
Thhalv10003867m.g Eutrema salsugineum HOM05D006337 ORTHO05D008050 5.7e-203 711.4 573 66.7
AUR62006741 Chenopodium quinoa HOM05D006337 ORTHO05D008050 1.6e-202 709.9 568 65.8
CARHR186710 Cardamine hirsuta HOM05D006337 ORTHO05D008050 2.8e-202 709.1 579 66.8
Sp2g21170 Schrenkiella parvula HOM05D006337 ORTHO05D008050 4.8e-202 708.4 573 65.8
EL10Ac4g09464 Beta vulgaris HOM05D006337 ORTHO05D008050 8.2e-202 707.6 627 62.4
CAN.G1076.22 Capsicum annuum HOM05D006337 ORTHO05D008050 4.1e-201 705.3 581 63.2
BraA02t08870Z Brassica rapa HOM05D006337 ORTHO05D008050 5.9e-200 701.4 602 63.3
C02p58590 Brassica napus HOM05D006337 ORTHO05D008050 7.7e-200 701.0 602 63.1
Peaxi162Scf01061g00122 Petunia axillaris HOM05D006337 ORTHO05D008050 7.7e-200 701.0 542 67.3
BolC2t11920H Brassica oleracea HOM05D006337 ORTHO05D008050 1.7e-199 699.9 602 63.3
A02p39000 Brassica napus HOM05D006337 ORTHO05D008050 5.0e-199 698.4 602 63.3
BcaC03g17830 Brassica carinata HOM05D006337 ORTHO05D008050 6.5e-199 698.0 602 63.1
Nitab4.5_0004525g0030 Nicotiana tabacum HOM05D006337 ORTHO05D008050 1.2e-197 693.7 597 63.5
BcaNung06218 Brassica carinata HOM05D006337 ORTHO05D008050 1.0e-196 690.6 601 62.6
Sopen01g044110 Solanum pennellii HOM05D006337 ORTHO05D008050 1.4e-196 690.3 587 62.7
PGSC0003DMG400002762 Solanum tuberosum HOM05D006337 ORTHO05D008050 2.3e-196 689.5 587 62.4
ECA232G4422 Erigeron canadensis HOM05D006337 ORTHO05D008050 3.0e-196 689.1 535 67.9
AL6G38700 Arabidopsis lyrata HOM05D006337 ORTHO05D008050 1.1e-195 687.2 586 64.3
Solyc01g100610.3 Solanum lycopersicum HOM05D006337 ORTHO05D008050 2.0e-195 686.4 547 65.3
Aqoxy5G02944 Aquilegia oxysepala HOM05D006337 ORTHO05D008050 3.3e-195 685.6 609 61.6
AT5G26820 Arabidopsis thaliana HOM05D006337 ORTHO05D008050 7.4e-195 684.5 586 64.2
Carub.0006s2448 Capsella rubella HOM05D006337 ORTHO05D008050 2.2e-194 682.9 573 64.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.5e-192 676.8 574 62.2
SalBow3G0030 Salvia bowleyana HOM05D006337 ORTHO05D008050 7.7e-192 674.5 605 61.5
HanXRQChr09g0258701 Helianthus annuus HOM05D006337 ORTHO05D008050 1.3e-191 673.7 534 65.5
ATR0693G447 Amborella trichopoda HOM05D006337 ORTHO05D008050 8.5e-191 671.0 568 63.2
Lsat_1_v5_gn_8_116121 Lactuca sativa HOM05D006337 ORTHO05D008050 2.5e-190 669.5 535 66.7
Oeu052934.2 Olea europaea HOM05D006337 ORTHO05D008050 4.2e-190 668.7 474 71.5
HanXRQChr15g0486571 Helianthus annuus HOM05D006337 ORTHO05D008050 1.6e-189 666.8 579 63.4
SGA_v2.0_scaffold4G01972 Striga asiatica HOM05D006337 ORTHO05D008050 3.6e-189 665.6 570 62.5
Rhsim11G0096400 Rhododendron simsii HOM05D006337 ORTHO05D008050 2.3e-188 662.9 611 61.0
DCAR_005423 Daucus carota HOM05D006337 ORTHO05D008050 1.5e-187 660.2 529 64.8
Actinidia35517 Actinidia chinensis HOM05D006337 ORTHO05D008050 1.7e-186 656.8 570 61.9
SGA_v2.0_scaffold5G02894 Striga asiatica HOM05D006337 ORTHO05D008050 8.8e-180 634.4 537 62.9
unitig_8.g4946 Utricularia gibba HOM05D006337 ORTHO05D008050 7.2e-174 614.8 546 60.8
Os12g0562100 Oryza sativa ssp. japonica HOM05D006337 ORTHO05D008050 2.2e-170 603.2 551 57.0
HPP92_010606 Vanilla planifolia HOM05D006337 ORTHO05D008050 1.5e-163 580.5 548 56.9
SEGI_32498 Sequoiadendron giganteum HOM05D006337 ORTHO05D008050 5.7e-163 578.6 545 57.2
Hund07310 Selenicereus undatus HOM05D006337 ORTHO05D008050 5.9e-160 568.5 569 57.5
CiPaw.07G030200 Carya illinoinensis HOM05D006337 ORTHO05D008050 7.7e-160 568.2 395 73.9
Pp3c25_630 Physcomitrium patens HOM05D006337 ORTHO05D008050 1.1e-137 494.6 488 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2655 Anthoceros agrestis HOM05D006337 ORTHO05D008050 3.6e-133 479.6 478 52.5
Pp3c5_21200 Physcomitrium patens HOM05D006337 ORTHO05D008050 1.2e-131 474.6 497 50.9
CDE02G2949 Ceratophyllum demersum HOM05D006337 ORTHO05D008050 2.9e-130 469.9 454 57.7
SMO118G0422 Selaginella moellendorffii HOM05D006337 ORTHO05D008050 3.3e-126 456.4 462 52.8
Dinv24464 Davidia involucrata HOM05D006337 ORTHO05D008050 4.0e-124 449.5 400 62.0
Mapoly0001s0146 Marchantia polymorpha HOM05D006337 ORTHO05D008050 1.0e-119 434.9 506 48.0
Pp3c25_1200 Physcomitrium patens HOM05D006337 ORTHO05D008050 4.0e-116 422.9 452 48.7
Zm00001eb028490 Zea mays HOM05D006337 ORTHO05D008050 2.6e-107 393.7 327 62.1
Aa31LG11G9810 Aethionema arabicum HOM05D006337 ORTHO05D008050 2.4e-100 370.5 377 55.4
CDE09G1129 Ceratophyllum demersum HOM05D006337 ORTHO05D008050 1.0e-90 338.6 335 54.0
TWI12G0276 Tripterygium wilfordii HOM05D006337 ORTHO05D008050 1.7e-61 241.5 206 64.6
CBR_g24322 Chara braunii HOM05D006337 ORTHO05D008050 2.0e-51 208.0 258 46.1
CDE09G1014 Ceratophyllum demersum HOM05D000041 ORTHO05D000061 2.6e-46 191.0 136 72.1
Zm00001eb354930 Zea mays HOM05D006337 ORTHO05D008050 2.7e-43 181.0 251 43.4
vmacro01570 Vaccinium macrocarpon HOM05D006337 ORTHO05D008050 1.4e-39 168.7 212 52.4
Glyma.20G096402 Glycine max HOM05D006337 ORTHO05D008050 3.2e-36 157.5 118 68.6
Os05g0131500 Oryza sativa ssp. japonica HOM05D006337 ORTHO05D008050 1.6e-32 145.2 151 48.3
Pp3c20_5190 Physcomitrium patens HOM05D004253 ORTHO05D005013 1.9e-28 131.7 481 26.4
Lalb_Chr02g0147771 Lupinus albus HOM05D006337 ORTHO05D008050 7.8e-27 126.3 80 86.2
Mapoly0049s0027 Marchantia polymorpha HOM05D004253 ORTHO05D005013 2.5e-25 121.3 524 25.8
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 1.2e-22 112.5 503 25.8
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 1.7e-21 108.6 461 26.9
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 2.2e-21 108.2 509 25.0
SMO118G0042 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 3.7e-21 107.5 454 26.4
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 8.3e-21 106.3 440 27.0
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 1.2e-19 102.4 459 24.2
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 1.6e-19 102.1 480 25.8
vmacro01569 Vaccinium macrocarpon HOM05D006337 ORTHO05D008050 4.6e-19 100.5 83 65.1
VMungo0331G0982 Vigna mungo HOM05D004253 ORTHO05D005013 1.0e-18 99.4 498 24.1
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 1.3e-18 99.0 480 24.8
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 5.1e-18 97.1 438 24.0
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 8.6e-18 96.3 478 24.7
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 1.1e-17 95.9 496 23.6
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 1.5e-17 95.5 461 25.4
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis HOM05D004253 ORTHO05D005013 1.9e-17 95.1 450 26.2
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 2.5e-17 94.7 480 24.4
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 4.3e-17 94.0 418 25.1
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 9.5e-17 92.8 456 24.3
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 1.2e-16 92.4 465 24.5
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 2.1e-16 91.7 460 23.7
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 6.2e-16 90.1 468 23.9
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 6.2e-16 90.1 448 24.1
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 8.1e-16 89.7 474 23.6
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.4e-15 89.0 465 24.3
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 1.4e-15 89.0 445 24.7
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 3.1e-15 87.8 465 23.4
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 3.1e-15 87.8 421 24.7
Zm00001eb384360 Zea mays HOM05D004253 ORTHO05D005013 3.1e-15 87.8 417 26.4
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 4.0e-15 87.4 458 23.4
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 5.2e-15 87.0 441 23.4
Phvul.010G062300 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 5.2e-15 87.0 449 24.1
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.2e-14 85.9 471 23.6
CBR_g24318 Chara braunii HOM05D001161 ORTHO05D000497 1.2e-14 85.9 196 32.1
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 1.2e-14 85.9 476 24.6
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 1.5e-14 85.5 465 23.7
CANSAT35G1695 Cannabis sativa HOM05D004253 ORTHO05D005013 5.8e-14 83.6 469 23.9
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 1.7e-13 82.0 486 23.0
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 2.2e-13 81.6 486 22.0
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 2.9e-13 81.3 482 22.2
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 3.8e-13 80.9 447 22.4
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 4.9e-13 80.5 483 22.8
unitig_8.g4466 Utricularia gibba HOM05D004253 ORTHO05D005013 4.9e-13 80.5 350 24.6
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 4.1e-12 77.4 492 21.7
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 9.2e-12 76.3 469 22.6
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 2.1e-11 75.1 209 30.1
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 6.6e-10 70.1 452 22.6
SEGI_29225 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 8.7e-10 69.7 356 25.6
HanXRQChr10g0287841 Helianthus annuus HOM05D004253 ORTHO05D005013 4.3e-09 67.4 223 27.8
Lsat_1_v5_gn_9_37021 Lactuca sativa HOM05D004253 ORTHO05D005013 2.8e-08 64.7 217 26.3
CBR_g42062 Chara braunii HOM05D004253 ORTHO05D005013 3.6e-08 64.3 174 29.3
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 4.0e-07 60.8 424 22.9
MSTRG.18966 Avicennia marina HOM05D004253 ORTHO05D005013 2.6e-06 58.2 124 35.5


User provided reference genes

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