Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 2.0e-82 308.9 143 100.0
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 3.4e-21 105.5 60 85.0
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 3.4e-21 105.5 60 85.0
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 7.5e-21 104.4 70 71.4
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 7.5e-21 104.4 70 71.4
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 7.5e-21 104.4 59 83.1
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 7.5e-21 104.4 59 83.1
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 9.8e-21 104.0 59 79.7
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.3e-20 103.6 63 73.0
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 2.2e-20 102.8 59 81.4
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 3.7e-20 102.1 59 76.3
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 6.4e-20 101.3 58 79.3
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 8.3e-20 100.9 59 81.4
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.4e-19 100.1 58 77.6
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.9e-19 99.8 59 78.0
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 2.4e-19 99.4 59 76.3
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 2.4e-19 99.4 72 69.4
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 2.4e-19 99.4 59 78.0
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.0e-19 97.8 60 71.7
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 7.0e-19 97.8 59 79.7
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 9.2e-19 97.4 59 72.9
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.2e-18 97.1 60 71.7
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 1.6e-18 96.7 59 76.3
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 1.6e-18 96.7 59 76.3
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 1.6e-18 96.7 59 76.3
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 1.6e-18 96.7 59 76.3
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-18 96.3 59 72.9
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-18 96.3 59 72.9
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 2.7e-18 95.9 59 71.2
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 3.5e-18 95.5 59 71.2
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 4.6e-18 95.1 59 71.2
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 6.0e-18 94.7 59 71.2
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 1.0e-17 94.0 59 69.5
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 1.0e-17 94.0 59 74.6
Glyma.20G045300 Glycine max HOM05D012319 ORTHO05D014073 1.0e-17 94.0 44 90.9
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.0e-17 94.0 59 71.2
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 69.5
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-17 93.6 59 71.2
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 1.3e-17 93.6 61 73.8
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 1.7e-17 93.2 59 71.2
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 2.3e-17 92.8 59 69.5
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 2.3e-17 92.8 59 76.3
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 3.9e-17 92.0 59 69.5
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.0e-17 91.7 59 69.5
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 6.6e-17 91.3 59 67.8
Phvul.009G022032 Phaseolus vulgaris HOM05D012319 ORTHO05D014073 6.6e-17 91.3 44 88.6
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 8.6e-17 90.9 59 69.5
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 1.1e-16 90.5 56 71.4
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-16 90.1 59 69.5
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-16 90.1 59 69.5
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-16 90.1 59 69.5
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-16 90.1 59 69.5
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-16 90.1 59 69.5
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 5.6e-16 88.2 59 67.8
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 7.3e-16 87.8 59 66.1
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 2.8e-15 85.9 59 67.8
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 2.3e-14 82.8 49 85.7
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 2.3e-14 82.8 59 67.8
Phvul.004G062700 Phaseolus vulgaris HOM05D012319 ORTHO05D014073 1.2e-13 80.5 43 76.7
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 2.0e-13 79.7 51 70.6
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 4.4e-13 78.6 50 70.0
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 5.8e-13 78.2 44 81.8
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.7e-12 76.6 77 49.4
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.7e-12 76.6 77 49.4
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 4.9e-12 75.1 59 67.8
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.1e-11 73.9 60 55.0
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 2.4e-11 72.8 43 79.1
arahy.Tifrunner.gnm1.ann1.Q9IK60 Arachis hypogaea HOM05D000216 ORTHO05D014073 9.2e-11 70.9 86 46.5
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 2.1e-10 69.7 39 82.1
COL.COLO4_00387 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
COL.COLO4_00426 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
COL.COLO4_00805 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
COL.COLO4_02237 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
COL.COLO4_02601 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
COL.COLO4_03103 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
COL.COLO4_28162 Corchorus olitorius HOM05D012319 ORTHO05D014073 5.1e-09 65.1 28 92.9
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 8.6e-09 64.3 49 65.3
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.1e-08 63.9 60 53.3
LjContig00318g0001418 Lotus japonicus HOM05D012319 ORTHO05D014073 1.1e-08 63.9 44 68.2
LjContig00319g0010901 Lotus japonicus HOM05D012319 ORTHO05D014073 1.1e-08 63.9 44 68.2
LjContig00319g0015178 Lotus japonicus HOM05D012319 ORTHO05D014073 1.1e-08 63.9 44 68.2
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.5e-08 63.5 60 48.3
COL.COLO4_01891 Corchorus olitorius HOM05D012319 ORTHO05D014073 4.3e-08 62.0 34 82.4
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 7.3e-08 61.2 60 46.7
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 1.1e-06 57.4 52 61.5
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 1.1e-06 57.4 52 61.5
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 6.8e-06 54.7 35 65.7
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.9e-06 54.3 59 49.2


User provided reference genes

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