Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JC7BND Arachis hypogaea HOM05D000881 ORTHO05D000666 1.7e-85 319.3 163 100.0
arahy.Tifrunner.gnm1.ann1.UXI833 Arachis hypogaea HOM05D000881 ORTHO05D000666 1.1e-81 306.6 163 95.7
Lj2g0006631 Lotus japonicus HOM05D000881 ORTHO05D000666 3.5e-22 109.0 137 50.4
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 6.6e-21 104.8 161 39.1
TPR.G19878 Trifolium pratense HOM05D000881 ORTHO05D000666 3.3e-20 102.4 155 40.6
arahy.Tifrunner.gnm1.ann1.Y8A2Y7 Arachis hypogaea HOM05D000881 ORTHO05D000666 4.3e-20 102.1 126 47.6
Medtr6g478190 Medicago truncatula HOM05D000881 ORTHO05D000666 5.6e-20 101.7 153 42.5
arahy.Tifrunner.gnm1.ann1.J1HUHD Arachis hypogaea HOM05D000881 ORTHO05D000666 1.8e-18 96.7 129 46.5
Lalb_Chr14g0370271 Lupinus albus HOM05D000881 ORTHO05D000666 4.4e-17 92.0 177 37.9
Glyma.09G165300 Glycine max HOM05D000881 ORTHO05D000666 2.9e-16 89.4 155 41.9
Phvul.004G140900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.7e-13 80.1 146 39.7
VMungo0331G1612 Vigna mungo HOM05D008573 ORTHO05D009911 2.3e-13 79.7 146 41.1
Manes.09G138800 Manihot esculenta HOM05D000881 ORTHO05D000666 6.6e-13 78.2 83 51.8
Potri.013G054700 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.2e-11 73.9 135 33.3
Cpa.g.sc161.5 Carica papaya HOM05D000881 ORTHO05D000666 8.0e-11 71.2 95 40.0
AUR62036272 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.1e-10 70.9 87 46.0
Thecc.05G246300 Theobroma cacao HOM05D000881 ORTHO05D000666 2.3e-10 69.7 82 45.1
CAN.G439.20 Capsicum annuum HOM05D000881 ORTHO05D000666 3.1e-10 69.3 88 44.3
Cfa017677 Carpinus fangiana HOM05D000881 ORTHO05D000666 4.0e-10 68.9 135 37.0
COL.COLO4_32969 Corchorus olitorius HOM05D000881 ORTHO05D000666 4.0e-10 68.9 115 37.4
FAN04G1642 Fragaria x ananassa HOM05D000881 ORTHO05D000666 4.0e-10 68.9 87 37.9
Nn2g15728 Nelumbo nucifera HOM05D000881 ORTHO05D000666 4.0e-10 68.9 88 42.0
FvH4_5g18340 Fragaria vesca HOM05D000881 ORTHO05D000666 5.2e-10 68.6 87 37.9
FAN08G3596 Fragaria x ananassa HOM05D000881 ORTHO05D000666 5.2e-10 68.6 83 39.8
FAN18G3122 Fragaria x ananassa HOM05D000881 ORTHO05D000666 5.2e-10 68.6 87 37.9
RcHm_v2.0_Chr7g0177251 Rosa chinensis HOM05D000881 ORTHO05D000666 6.8e-10 68.2 91 35.2
Duzib177G0536 Durio zibethinus HOM05D000881 ORTHO05D000666 8.9e-10 67.8 111 34.2
CSS0033822 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 1.2e-09 67.4 111 41.4
CsaV3_1G005060 Cucumis sativus L. HOM05D000881 ORTHO05D000666 1.2e-09 67.4 139 38.1
Actinidia03944 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.5e-09 67.0 103 45.6
QL10p034472 Quercus lobata HOM05D000881 ORTHO05D000666 1.5e-09 67.0 80 41.2
Sed0019450 Sechium edule HOM05D000881 ORTHO05D000666 1.5e-09 67.0 143 35.7
Ciclev10022272m.g Citrus clementina HOM05D000881 ORTHO05D000666 2.0e-09 66.6 77 45.5
Psat3g087960 Pisum sativum HOM05D000881 ORTHO05D000666 2.0e-09 66.6 110 36.4
Potri.013G054800 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.6e-09 66.2 91 38.5
Peaxi162Scf00345g00410 Petunia axillaris HOM05D000881 ORTHO05D000666 3.4e-09 65.9 81 44.4
TWI34G1202 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.4e-09 65.9 117 35.9
PSO339G2895 Papaver somniferum HOM05D000881 ORTHO05D000666 5.8e-09 65.1 77 45.5
Potri.013G054900 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.8e-09 65.1 106 35.8
Solyc11g071560.2 Solanum lycopersicum HOM05D000881 ORTHO05D000666 5.8e-09 65.1 110 40.0
TWI60G0863 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 5.8e-09 65.1 102 38.2
Nitab4.5_0005222g0020 Nicotiana tabacum HOM05D000881 ORTHO05D000666 7.5e-09 64.7 86 40.7
Atru.chr2.1411 Acer truncatum HOM05D000881 ORTHO05D000666 9.8e-09 64.3 91 42.9
EL10Ac5g11763 Beta vulgaris HOM05D000881 ORTHO05D000666 9.8e-09 64.3 82 41.5
ClCG04G012640 Citrullus lanatus HOM05D000881 ORTHO05D000666 9.8e-09 64.3 138 36.2
Dinv03863 Davidia involucrata HOM05D000881 ORTHO05D000666 9.8e-09 64.3 134 30.6
MELO3C001943.2 Cucumis melo HOM05D000881 ORTHO05D000666 1.3e-08 63.9 139 38.8
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.3e-08 63.9 86 43.0
Prupe.5G242900 Prunus persica HOM05D000881 ORTHO05D000666 1.7e-08 63.5 71 47.9
Dinv11927 Davidia involucrata HOM05D000881 ORTHO05D000666 2.2e-08 63.2 85 43.5
Gohir.D08G017600 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.2e-08 63.2 74 47.3
PGSC0003DMG400018717 Solanum tuberosum HOM05D000881 ORTHO05D000666 2.2e-08 63.2 86 41.9
PSO384G5096 Papaver somniferum HOM05D000881 ORTHO05D000666 2.9e-08 62.8 79 43.0
RcHm_v2.0_Chr3g0496561 Rosa chinensis HOM05D000881 ORTHO05D000666 2.9e-08 62.8 145 32.4
Sopen01g004670 Solanum pennellii HOM05D000881 ORTHO05D000666 2.9e-08 62.8 86 41.9
AUR62036273 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.7e-08 62.4 75 46.7
AUR62039723 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.7e-08 62.4 75 46.7
Gohir.A08G007500 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.7e-08 62.4 74 47.3
Gohir.D11G244000 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.7e-08 62.4 74 44.6
Gorai.007G259500 Gossypium raimondii HOM05D000881 ORTHO05D000666 3.7e-08 62.4 74 44.6
Actinidia37794 Actinidia chinensis HOM05D000881 ORTHO05D000666 4.9e-08 62.0 81 45.7
Gohir.A11G232800 Gossypium hirsutum HOM05D000881 ORTHO05D000666 4.9e-08 62.0 73 45.2
Medtr7g086130 Medicago truncatula HOM05D000881 ORTHO05D000666 4.9e-08 62.0 72 44.4
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 4.9e-08 62.0 80 45.0
Sabra19G0049000 Salix brachista HOM05D000881 ORTHO05D000666 4.9e-08 62.0 94 39.4
PGSC0003DMG400002009 Solanum tuberosum HOM05D000881 ORTHO05D000666 4.9e-08 62.0 78 42.3
Potri.019G037700 Populus trichocarpa HOM05D000881 ORTHO05D000666 6.4e-08 61.6 88 34.1
Gorai.004G012000 Gossypium raimondii HOM05D000881 ORTHO05D000666 8.3e-08 61.2 74 45.9
Nitab4.5_0007747g0030 Nicotiana tabacum HOM05D000881 ORTHO05D000666 8.3e-08 61.2 87 40.2
Nitab4.5_0018311g0010 Nicotiana tabacum HOM05D000881 ORTHO05D000666 8.3e-08 61.2 87 36.8
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 1.1e-07 60.8 85 43.5
CSS0021436 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 1.1e-07 60.8 111 40.5
Hma1.2p1_0218F.1_g092400 Hydrangea macrophylla HOM05D000881 ORTHO05D000666 1.1e-07 60.8 108 35.2
Lj1g0015574 Lotus japonicus HOM05D000881 ORTHO05D000666 1.1e-07 60.8 110 34.5
MD12G1007600 Malus domestica HOM05D000881 ORTHO05D000666 1.1e-07 60.8 170 32.4
MD14G1004900 Malus domestica HOM05D000881 ORTHO05D000666 1.1e-07 60.8 144 33.3
Oeu044647.1 Olea europaea HOM05D000881 ORTHO05D000666 1.1e-07 60.8 85 47.1
Thecc.05G246400 Theobroma cacao HOM05D000881 ORTHO05D000666 1.1e-07 60.8 75 46.7
TPR.G22510 Trifolium pratense HOM05D000881 ORTHO05D000666 1.1e-07 60.8 72 43.1
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.4e-07 60.5 86 37.2
AUR62039721 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.4e-07 60.5 78 39.7
AUR62039722 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.4e-07 60.5 66 47.0
FAN03G2527 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.4e-07 60.5 142 32.4
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 1.4e-07 60.5 85 37.6
Manes.09G138700 Manihot esculenta HOM05D000881 ORTHO05D000666 1.4e-07 60.5 82 45.1
Nitab4.5_0000157g0350 Nicotiana tabacum HOM05D000881 ORTHO05D000666 1.4e-07 60.5 87 35.6
Peaxi162Scf01021g00028 Petunia axillaris HOM05D000881 ORTHO05D000666 1.4e-07 60.5 86 41.9
Sabra13G0049100 Salix brachista HOM05D000881 ORTHO05D000666 1.4e-07 60.5 91 36.3
Sabra13G0049200 Salix brachista HOM05D000881 ORTHO05D000666 1.4e-07 60.5 91 36.3
Sabra13G0049300 Salix brachista HOM05D000881 ORTHO05D000666 1.4e-07 60.5 91 36.3
Cfa017684 Carpinus fangiana HOM05D000881 ORTHO05D000666 1.9e-07 60.1 73 39.7
Duzib128G0083 Durio zibethinus HOM05D000391 ORTHO05D010205 1.9e-07 60.1 66 48.5
Prupe.7G008300 Prunus persica HOM05D000881 ORTHO05D000666 1.9e-07 60.1 90 40.0
PGSC0003DMG400008714 Solanum tuberosum HOM05D000881 ORTHO05D000666 1.9e-07 60.1 86 40.7
CSS0028596 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.4e-07 59.7 79 45.6
Gohir.A05G076300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.4e-07 59.7 79 40.5
Gohir.D08G236060 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.4e-07 59.7 128 32.8
Gorai.004G251100 Gossypium raimondii HOM05D000881 ORTHO05D000666 2.4e-07 59.7 128 32.8
AUR62044159 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.2e-07 59.3 75 44.0
Dinv25100 Davidia involucrata HOM05D000881 ORTHO05D000666 3.2e-07 59.3 78 41.0
Gorai.013G194400 Gossypium raimondii HOM05D000881 ORTHO05D000666 3.2e-07 59.3 112 31.2
Ah.02g115190 Amaranthus hybridus HOM05D000881 ORTHO05D000666 4.1e-07 58.9 80 40.0
CSS0013808 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 4.1e-07 58.9 81 44.4
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 4.1e-07 58.9 109 33.0
FvH4_7g04830 Fragaria vesca HOM05D000881 ORTHO05D000666 4.1e-07 58.9 143 31.5
FAN06G1651 Fragaria x ananassa HOM05D000881 ORTHO05D000666 4.1e-07 58.9 143 31.5
Gohir.D08G236100 Gossypium hirsutum HOM05D000881 ORTHO05D000666 4.1e-07 58.9 82 42.7
Gorai.004G251000 Gossypium raimondii HOM05D000881 ORTHO05D000666 4.1e-07 58.9 147 29.9
TAR623G1394 Trochodendron aralioides HOM05D000881 ORTHO05D000666 4.1e-07 58.9 86 37.2
Gorai.004G251300 Gossypium raimondii HOM05D000881 ORTHO05D000666 5.4e-07 58.5 82 42.7
Nn4g22126 Nelumbo nucifera HOM05D000881 ORTHO05D000666 5.4e-07 58.5 86 38.4
CANSAT78G1545 Cannabis sativa HOM05D000881 ORTHO05D000666 7.1e-07 58.2 78 41.0
Lalb_Chr14g0364621 Lupinus albus HOM05D000881 ORTHO05D000666 7.1e-07 58.2 79 36.7
Solyc09g007140.4 Solanum lycopersicum HOM05D000881 ORTHO05D000666 7.1e-07 58.2 78 41.0
Sopen09g002010 Solanum pennellii HOM05D000881 ORTHO05D000666 7.1e-07 58.2 78 41.0
AUR62041192 Chenopodium quinoa HOM05D000881 ORTHO05D000666 9.2e-07 57.8 75 42.7
Cc00_g06220 Coffea canephora HOM05D000881 ORTHO05D000666 9.2e-07 57.8 86 41.9
COL.COLO4_32970 Corchorus olitorius HOM05D000881 ORTHO05D000666 9.2e-07 57.8 117 32.5
Gohir.A08G219200 Gossypium hirsutum HOM05D000881 ORTHO05D000666 9.2e-07 57.8 128 32.0
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 1.2e-06 57.4 81 40.7
Gohir.A08G219300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.2e-06 57.4 143 30.8
Hund20971 Selenicereus undatus HOM05D000881 ORTHO05D000666 1.2e-06 57.4 90 38.9
Aqoxy2G03856 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 1.6e-06 57.0 103 34.0
Gohir.A13G164900 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.6e-06 57.0 112 29.5
Gohir.D08G236040 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.6e-06 57.0 147 29.9
Nn4g23057 Nelumbo nucifera HOM05D000881 ORTHO05D000666 1.6e-06 57.0 81 35.8
Cfa017687 Carpinus fangiana HOM05D000881 ORTHO05D000666 2.1e-06 56.6 114 36.0
Gohir.D13G167700 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.1e-06 56.6 72 40.3
Hund15056 Selenicereus undatus HOM05D000881 ORTHO05D000666 2.1e-06 56.6 74 40.5
arahy.Tifrunner.gnm1.ann1.DQ4RIU Arachis hypogaea HOM05D000881 ORTHO05D000666 2.7e-06 56.2 78 38.5
MSTRG.21312 Avicennia marina HOM05D000881 ORTHO05D000666 2.7e-06 56.2 87 37.9
AUR62036271 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.7e-06 56.2 78 37.2
Gorai.009G080600 Gossypium raimondii HOM05D000881 ORTHO05D000666 2.7e-06 56.2 67 43.3
Prupe.6G151500 Prunus persica HOM05D000881 ORTHO05D000666 2.7e-06 56.2 104 32.7
CANSAT64G1865 Cannabis sativa HOM05D000881 ORTHO05D000666 3.5e-06 55.8 73 42.5
Cpa.g.sc103.98 Carica papaya HOM05D000881 ORTHO05D000666 3.5e-06 55.8 102 37.3
CDE04G2129 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 3.5e-06 55.8 104 38.5
CDE07G1560 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 3.5e-06 55.8 146 32.9
Ciclev10022629m.g Citrus clementina HOM05D000881 ORTHO05D000666 3.5e-06 55.8 81 34.6
Dinv25102 Davidia involucrata HOM05D000881 ORTHO05D000666 3.5e-06 55.8 65 44.6
Duzib068G0091 Durio zibethinus HOM05D000881 ORTHO05D000666 3.5e-06 55.8 97 38.1
Gohir.D05G079100 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.5e-06 55.8 67 43.3
Hma1.2p1_0218F.1_g092410 Hydrangea macrophylla HOM05D000881 ORTHO05D000666 3.5e-06 55.8 97 37.1
Manes.08G146200 Manihot esculenta HOM05D000881 ORTHO05D000666 3.5e-06 55.8 117 35.0
PSO832G1594 Papaver somniferum HOM05D000881 ORTHO05D000666 3.5e-06 55.8 88 38.6
Sed0007633 Sechium edule HOM05D000881 ORTHO05D000666 3.5e-06 55.8 87 37.9
EL10Ac5g11762 Beta vulgaris HOM05D000881 ORTHO05D000666 4.6e-06 55.5 78 37.2
Ciclev10016041m.g Citrus clementina HOM05D000881 ORTHO05D000666 4.6e-06 55.5 90 40.0
MD06G1239100 Malus domestica HOM05D000881 ORTHO05D000666 4.6e-06 55.5 142 27.5
Sc01g0005070 Simmondsia chinensis HOM05D000881 ORTHO05D000666 4.6e-06 55.5 81 38.3
Sc06g0002830 Simmondsia chinensis HOM05D000881 ORTHO05D000666 4.6e-06 55.5 77 44.2
Sabra04G0129800 Salix brachista HOM05D000881 ORTHO05D000666 6.0e-06 55.1 88 42.0
Thecc.05G246200 Theobroma cacao HOM05D000881 ORTHO05D000666 6.0e-06 55.1 103 35.0
arahy.Tifrunner.gnm1.ann1.ED5JXQ Arachis hypogaea HOM05D000881 ORTHO05D000666 7.8e-06 54.7 78 38.5
PSO591G0061 Papaver somniferum HOM05D000881 ORTHO05D000666 7.8e-06 54.7 88 38.6
Sabra13G0049400 Salix brachista HOM05D000881 ORTHO05D000666 7.8e-06 54.7 90 34.4


User provided reference genes

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