Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 1.8e-239 832.4 487 100.0
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 2.3e-154 549.7 488 77.3
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 2.3e-117 426.8 492 52.0
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 3.4e-113 412.9 500 51.2
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 4.9e-112 409.1 488 51.4
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 5.4e-111 405.6 489 50.9
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 1.0e-109 401.4 501 49.9
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.8e-107 393.3 556 56.3
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 3.1e-106 389.8 481 50.5
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 3.5e-102 376.3 516 55.4
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.0e-101 374.8 487 48.9
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.6e-97 360.1 490 47.6
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 6.0e-94 349.0 483 44.7
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 3.9e-93 346.3 521 50.1
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.1e-92 344.7 533 52.2
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.8e-91 340.1 487 44.1
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 8.1e-91 338.6 487 43.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.3e-90 337.0 488 44.5
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 3.1e-90 336.7 480 44.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.5e-89 334.3 486 43.4
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 7.6e-89 332.0 491 43.0
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.9e-88 330.1 486 42.6
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.9e-88 330.1 485 43.1
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.1e-86 323.9 491 45.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 4.6e-86 322.8 484 41.9
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 6.0e-86 322.4 495 42.2
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 6.0e-86 322.4 486 43.2
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.1e-84 318.2 486 45.1
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.9e-84 317.4 537 50.1
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 3.3e-84 316.6 485 42.9
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.8e-83 313.5 496 40.9
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.4e-82 311.2 535 48.6
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 3.1e-82 310.1 486 41.8
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.0e-82 309.7 501 47.5
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.2e-81 308.1 517 51.1
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.0e-81 307.4 503 53.7
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 1.1e-79 301.6 492 39.8
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 1.9e-79 300.8 489 48.3
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 4.2e-79 299.7 493 40.8
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 4.2e-79 299.7 484 40.7
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 7.1e-79 298.9 487 39.6
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 9.3e-79 298.5 487 40.7
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.7e-77 294.3 543 48.6
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 2.3e-77 293.9 473 41.4
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 3.0e-77 293.5 516 50.2
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 3.9e-77 293.1 481 48.9
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 3.9e-77 293.1 518 51.5
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.9e-76 290.8 535 49.2
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 5.6e-76 289.3 527 37.8
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.3e-76 288.9 535 49.0
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 2.1e-75 287.3 512 50.6
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 6.2e-75 285.8 522 47.1
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 8.1e-75 285.4 497 50.3
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 8.1e-75 285.4 534 49.8
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.4e-74 284.6 544 49.1
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.9e-74 282.3 526 48.9
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 4.5e-73 279.6 494 39.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 4.5e-73 279.6 500 52.2
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.3e-72 278.1 500 48.6
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.7e-72 277.7 483 40.4
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 2.9e-72 276.9 508 49.4
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.9e-72 276.2 509 49.3
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.4e-72 275.8 508 49.4
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.4e-71 274.6 443 41.1
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.4e-71 274.6 481 47.6
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.9e-71 274.2 540 47.0
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 5.4e-71 272.7 518 48.1
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 1.6e-70 271.2 491 37.9
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 2.7e-70 270.4 481 50.5
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.0e-69 268.5 420 41.2
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.3e-69 268.1 492 47.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.8e-69 267.7 519 42.2
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 3.0e-69 266.9 498 38.2
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 5.6e-68 262.7 444 39.6
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 9.6e-68 261.9 535 46.9
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 9.0e-66 255.4 491 46.2
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 9.0e-66 255.4 509 38.7
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 2.0e-65 254.2 488 37.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.6e-65 253.8 485 41.4
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.6e-65 253.8 485 41.4
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 2.6e-65 253.8 501 47.5
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 7.6e-65 252.3 496 49.0
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.9e-63 247.7 494 43.5
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 5.5e-63 246.1 494 44.9
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 7.1e-63 245.7 491 45.0
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.2e-62 245.0 538 46.1
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.3e-61 241.5 487 35.7
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 3.0e-61 240.4 486 46.7
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.1e-61 239.6 485 35.5
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 8.7e-61 238.8 441 39.2
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 1.5e-60 238.0 514 42.0
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 5.6e-60 236.1 523 46.7
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 5.6e-60 236.1 514 43.4
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 9.6e-60 235.3 526 46.8
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 2.1e-59 234.2 467 34.7
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 3.7e-59 233.4 419 39.1
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 1.4e-58 231.5 534 43.3
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 9.0e-58 228.8 490 35.7
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.3e-56 224.9 495 40.6
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 2.9e-56 223.8 524 43.7
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 2.9e-56 223.8 499 36.7
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.1e-55 221.9 493 42.6
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.9e-55 221.1 148 75.7
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.6e-54 218.0 526 40.3
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 7.9e-54 215.7 520 44.0
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 7.9e-54 215.7 475 34.7
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 5.1e-53 213.0 502 34.1
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.1e-52 211.8 530 34.3
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 1.3e-51 208.4 423 40.4
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-51 208.4 151 70.9
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 1.6e-51 208.0 504 43.1
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.6e-51 208.0 142 73.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 4.8e-51 206.5 472 38.1
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 4.8e-51 206.5 601 39.4
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.3e-51 206.1 561 40.3
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.3e-51 206.1 561 40.3
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 2.5e-47 194.1 614 37.3
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.6e-46 191.4 425 40.2
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 8.2e-43 179.1 417 38.1
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.4e-39 168.3 205 47.3
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 3.9e-37 160.2 452 31.2
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.5e-36 158.3 482 30.9
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 7.7e-33 146.0 279 41.2
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 7.7e-33 146.0 113 66.4
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 2.7e-30 137.5 178 48.3
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.5e-25 120.6 494 33.4
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 4.4e-20 103.6 99 50.5
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.1e-18 99.0 93 57.0
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.8e-18 98.2 159 42.1
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 9.1e-18 95.9 91 56.0
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 6.5e-16 89.7 183 31.1
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.7e-11 75.1 161 33.5
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 2.3e-08 64.7 81 46.9


User provided reference genes

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