Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.7e-227 792.3 401 100.0
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.7e-227 792.3 401 100.0
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 1.9e-93 347.1 395 49.9
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 5.4e-93 345.5 401 49.4
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 7.4e-90 335.1 415 48.0
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 6.4e-86 322.0 413 47.0
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 5.5e-85 318.9 382 47.6
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 2.4e-80 303.5 406 47.0
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 5.7e-74 282.3 418 42.8
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 1.3e-70 271.2 404 43.1
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 7.9e-68 261.9 399 44.9
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 7.7e-39 165.6 313 37.7
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 2.0e-34 151.0 433 31.2
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 5.7e-34 149.4 473 30.7
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 3.7e-33 146.7 453 32.9
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 8.3e-33 145.6 461 31.2
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 7.0e-32 142.5 457 31.1
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 9.1e-32 142.1 444 31.8
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 1.6e-31 141.4 449 32.5
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 1.6e-31 141.4 418 33.0
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 8.6e-30 135.6 282 34.8
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 2.5e-29 134.0 425 30.6
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 4.2e-29 133.3 465 30.8
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 4.7e-28 129.8 474 29.5
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 4.7e-28 129.8 456 30.5
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 1.4e-27 128.3 446 29.4
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 2.3e-27 127.5 456 30.0
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.5e-26 124.8 441 30.6
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 3.4e-26 123.6 462 29.7
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 7.5e-26 122.5 431 30.2
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 1.3e-25 121.7 426 28.9
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.3e-25 121.7 429 35.0
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 4.9e-25 119.8 365 30.7
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.4e-24 118.2 424 30.9
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 2.4e-24 117.5 409 29.6
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 2.4e-24 117.5 433 28.9
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 3.1e-24 117.1 449 29.4
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 9.2e-24 115.5 430 29.5
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 1.2e-23 115.2 405 29.9
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 7.8e-23 112.5 439 28.9
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.0e-22 112.1 418 30.1
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 1.7e-22 111.3 408 28.4
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 2.3e-22 110.9 448 26.8
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 5.0e-22 109.8 428 28.3
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 5.0e-22 109.8 425 33.2
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 6.6e-22 109.4 398 28.9
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 1.5e-21 108.2 425 28.9
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 3.3e-21 107.1 399 31.1
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 7.3e-21 105.9 461 28.9
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 2.1e-20 104.4 453 29.4
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 2.8e-20 104.0 391 32.0
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.4e-19 101.7 304 31.6
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 1.4e-19 101.7 458 28.4
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.4e-19 101.7 408 29.7
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 2.3e-19 100.9 162 42.6
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 2.0e-18 97.8 399 27.6
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 2.0e-18 97.8 424 26.9
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 3.4e-18 97.1 423 29.1
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 9.8e-18 95.5 436 27.5
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 9.8e-18 95.5 95 49.5
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.2e-17 94.4 313 28.8
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 2.2e-17 94.4 461 28.2
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 2.2e-17 94.4 448 28.1
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 2.9e-17 94.0 406 28.3
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 6.4e-17 92.8 185 37.8
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.4e-16 91.7 106 49.1
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 2.4e-16 90.9 416 27.2
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 5.4e-16 89.7 411 28.5
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 5.4e-16 89.7 404 26.0
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 2.0e-15 87.8 426 25.6
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 2.7e-15 87.4 415 26.7
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 2.7e-15 87.4 413 27.4
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 4.6e-15 86.7 337 30.9
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 5.9e-15 86.3 332 28.9
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 1.7e-14 84.7 416 26.7
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 2.3e-14 84.3 423 26.7
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 5.0e-14 83.2 423 26.2
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 6.6e-14 82.8 315 27.9
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.9e-13 81.3 488 26.2
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 7.3e-13 79.3 411 26.3
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 9.5e-13 79.0 330 25.5
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.2e-12 78.6 407 27.5
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 1.6e-12 78.2 417 25.4
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 8.0e-12 75.9 437 27.5
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 8.0e-12 75.9 429 28.9
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.4e-11 75.1 300 29.3
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 5.2e-11 73.2 465 27.5
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 2.0e-10 71.2 60 56.7
Psat2g146960 Pisum sativum HOM05D007047 ORTHO05D009177 1.7e-09 68.2 108 36.1
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 4.9e-09 66.6 463 25.1
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 4.9e-09 66.6 328 27.7
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 6.4e-09 66.2 450 23.6
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 8.3e-09 65.9 331 27.8
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 8.3e-09 65.9 314 27.1
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 4.1e-08 63.5 150 36.7
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 7.0e-08 62.8 402 24.9
Os11g0249300 Oryza sativa ssp. japonica HOM05D007047 ORTHO05D009177 7.0e-08 62.8 422 24.2
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 9.2e-08 62.4 147 30.6
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 1.2e-07 62.0 460 25.4
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 2.0e-07 61.2 140 38.6
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 2.7e-07 60.8 51 60.8
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 1.7e-06 58.2 110 36.4


User provided reference genes

Program Settings