Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.J3UYEB Arachis hypogaea HOM05D003325 ORTHO05D003852 5.7e-26 120.2 61 100.0
arahy.Tifrunner.gnm1.ann1.J64BKK Arachis hypogaea HOM05D000915 ORTHO05D084760 7.7e-15 83.2 44 93.2
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 1.1e-13 79.3 44 88.6
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.1e-13 79.3 44 88.6
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 5.7e-10 67.0 44 68.2
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 2.2e-09 65.1 41 73.2
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 2.2e-09 65.1 41 75.6
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 2.8e-09 64.7 41 73.2
arahy.Tifrunner.gnm1.ann1.RXUH3Q Arachis hypogaea HOM05D016848 ORTHO05D014290 3.7e-09 64.3 40 75.0
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.4e-08 62.4 41 70.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 2.4e-08 61.6 41 70.7
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 2.4e-08 61.6 48 64.6
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 3.1e-08 61.2 41 73.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 3.1e-08 61.2 41 68.3
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.1e-08 60.8 41 68.3
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 4.1e-08 60.8 41 68.3
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 4.1e-08 60.8 41 70.7
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 5.3e-08 60.5 41 68.3
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 6.9e-08 60.1 41 68.3
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 6.9e-08 60.1 41 68.3
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 6.9e-08 60.1 41 68.3
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 6.9e-08 60.1 41 65.9
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 6.9e-08 60.1 41 65.9
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 9.1e-08 59.7 41 68.3
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.5e-07 58.9 44 61.4
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 1.5e-07 58.9 41 63.4
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.5e-07 58.9 41 68.3
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 2.0e-07 58.5 41 63.4
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 2.0e-07 58.5 41 63.4
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 2.0e-07 58.5 41 65.9
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 2.6e-07 58.2 41 63.4
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.6e-07 58.2 44 59.1
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 3.4e-07 57.8 41 65.9
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.4e-07 57.8 44 59.1
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.4e-07 57.8 40 70.0
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.4e-07 57.8 40 70.0
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.4e-07 57.8 40 70.0
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 5.9e-07 57.0 41 68.3
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 5.9e-07 57.0 41 63.4
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 5.9e-07 57.0 41 68.3
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 7.7e-07 56.6 41 61.0
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 7.7e-07 56.6 41 65.9
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.7e-07 56.6 41 68.3
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.7e-07 56.6 41 68.3
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 7.7e-07 56.6 41 61.0
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.0e-06 56.2 41 65.9
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.0e-06 56.2 41 65.9
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 1.3e-06 55.8 42 66.7
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.3e-06 55.8 41 65.9
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 1.3e-06 55.8 41 63.4
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.3e-06 55.8 40 65.0
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.3e-06 55.8 41 63.4
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.7e-06 55.5 41 63.4
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.7e-06 55.5 44 61.4
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.7e-06 55.5 44 59.1
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-06 55.5 48 58.3
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-06 55.5 41 61.0
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-06 55.5 41 65.9
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.7e-06 55.5 50 54.0
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.2e-06 55.1 44 54.5
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.2e-06 55.1 44 56.8
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-06 55.1 48 54.2
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-06 55.1 36 69.4
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 2.2e-06 55.1 41 61.0
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 2.9e-06 54.7 43 65.1
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.8e-06 54.3 41 63.4
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.8e-06 54.3 41 56.1
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 5.0e-06 53.9 41 61.0
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 6.5e-06 53.5 44 54.5
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 6.5e-06 53.5 41 63.4
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 6.5e-06 53.5 41 61.0
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 6.5e-06 53.5 41 61.0
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 6.5e-06 53.5 50 52.0
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 6.5e-06 53.5 37 67.6
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 6.5e-06 53.5 41 56.1
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 8.5e-06 53.1 41 61.0
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 8.5e-06 53.1 41 61.0
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 8.5e-06 53.1 44 56.8


User provided reference genes

Program Settings