Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 0.0e+00 2518.0 1281 100.0
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 0.0e+00 2481.8 1283 98.8
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1603.2 1297 67.0
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1587.4 1298 66.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1582.0 1298 66.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 0.0e+00 1544.6 1297 65.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 0.0e+00 1541.6 1295 65.9
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 0.0e+00 1496.9 1296 64.5
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 0.0e+00 1477.2 1293 63.8
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 0.0e+00 1454.5 1300 62.7
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 0.0e+00 1375.1 1303 59.3
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 0.0e+00 1242.6 1288 55.4
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1145.6 1320 49.9
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1110.1 1321 50.7
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1103.6 1326 50.3
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1090.9 1320 49.2
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1087.8 1337 49.0
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1081.2 1315 48.7
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1076.2 1322 48.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.9e-309 1066.2 1309 48.1
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 8.1e-308 1060.8 1323 47.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 6.9e-307 1057.7 1310 47.9
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.4e-306 1055.0 1309 47.7
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.4e-304 1049.3 1297 48.1
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.4e-304 1048.1 1310 47.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 1.2e-303 1047.0 1313 47.2
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 6.0e-303 1044.6 1321 46.6
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 6.6e-302 1041.2 1317 47.6
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 6.6e-302 1041.2 1328 47.5
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 1.1e-301 1040.4 1328 46.5
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 9.6e-301 1037.3 1321 47.1
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 8.1e-300 1034.2 1317 46.8
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 1.8e-299 1033.1 1314 47.4
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 6.9e-299 1031.2 1317 47.1
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 9.9e-298 1027.3 1299 45.8
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.9e-297 1025.8 1307 47.4
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.9e-297 1025.8 1307 47.4
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 3.5e-287 992.3 1301 46.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 3.0e-286 989.2 1311 47.3
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.3e-285 985.3 1307 47.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 1.7e-281 973.4 1315 45.0
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.5e-277 960.3 1246 47.4
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.8e-267 926.8 1305 42.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.1e-267 925.6 1315 44.9
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.2e-265 919.8 1248 44.8
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 7.2e-264 914.8 1233 46.2
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 9.4e-264 914.4 1296 42.8
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 2.6e-261 906.4 1304 42.2
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 7.7e-258 894.8 1427 41.0
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 2.1e-255 886.7 1292 42.8
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 4.7e-255 885.6 1208 43.1
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.7e-255 885.6 1300 44.5
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 6.1e-255 885.2 1245 43.6
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 2.4e-251 873.2 1180 45.3
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 4.1e-251 872.5 1246 44.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 6.3e-244 848.6 1230 42.0
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.7e-239 833.2 1234 41.3
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 8.0e-239 831.6 1214 42.3
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 3.0e-238 829.7 1247 42.7
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 9.8e-237 824.7 1260 40.7
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.1e-235 821.2 1324 41.8
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.9e-233 813.1 1298 41.2
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 3.3e-232 809.7 1323 40.4
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 4.7e-231 805.8 1259 40.9
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 8.0e-231 805.1 1282 41.3
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.0e-230 804.7 1294 40.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 6.8e-230 802.0 1304 40.4
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 2.8e-228 796.6 1287 41.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.0e-225 788.1 1276 40.9
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.9e-225 786.6 1277 40.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 6.8e-214 748.8 1344 37.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 2.0e-205 720.7 1300 38.3
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.4e-205 719.9 1259 39.5
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.6e-201 705.3 805 51.8
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.0e-193 681.8 1261 36.7
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.9e-192 677.6 1311 36.5
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.8e-190 671.0 779 52.5
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 2.0e-189 667.5 1224 37.7
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.0e-185 655.2 1162 36.6
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.3e-183 648.3 1241 36.7
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 8.1e-183 645.6 1056 39.8
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 9.9e-181 638.6 1300 35.9
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.7e-180 637.9 1163 36.7
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.5e-173 614.8 1090 36.7
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.3e-168 596.7 1102 36.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 3.1e-166 590.5 1245 33.5
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 5.3e-166 589.7 1096 35.8
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.6e-165 587.4 1168 34.2
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 6.5e-164 582.8 996 36.6
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 5.9e-157 559.7 1278 33.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.6e-154 551.6 948 36.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 3.9e-153 547.0 699 48.4
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 3.7e-151 540.4 1247 32.6
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.9e-145 520.4 688 46.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.1e-134 485.7 688 47.1
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.0e-132 479.2 606 45.4
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 2.5e-131 474.6 631 41.7
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 2.2e-127 461.5 373 64.6
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.3e-124 452.2 674 44.1
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 9.8e-120 436.0 516 46.9
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 3.4e-112 411.0 738 38.8
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 9.2e-102 376.3 563 37.1
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.2e-98 365.9 746 37.0
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.4e-86 323.9 827 29.5
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.9e-83 315.5 913 31.8
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.9e-83 315.5 1101 27.6
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 6.2e-82 310.5 671 35.2
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.0e-73 281.2 650 36.2
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.9e-71 275.0 414 37.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 4.3e-67 261.2 782 26.6
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.6e-64 250.4 345 39.4
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.8e-41 176.0 292 49.0
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.8e-41 176.0 292 49.0
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.0e-40 172.6 319 32.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.6e-37 162.9 179 46.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.4e-28 133.3 536 28.4
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.0e-28 132.1 266 30.8
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 2.2e-26 125.9 100 58.0
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.0e-24 119.4 387 24.5
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 6.5e-23 114.4 220 35.9
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.0e-20 107.1 93 61.3
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 2.3e-20 105.9 192 36.5
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.7e-20 104.4 414 24.2
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.8e-17 96.3 192 34.4
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 5.3e-17 94.7 150 36.0
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.7e-16 92.4 551 26.9
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 5.0e-15 88.2 466 24.2
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.5e-14 86.7 192 32.8
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.2e-13 83.6 118 43.2
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.2e-11 77.0 553 25.0
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.6e-11 75.9 197 32.0
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 4.4e-11 75.1 302 22.8
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 5.7e-11 74.7 542 26.0
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.7e-10 73.2 553 24.8
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.7e-10 73.2 132 31.8
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.4e-09 69.3 164 35.4
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.2e-08 67.0 528 24.1
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 5.9e-08 64.7 552 23.9
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 3.8e-07 62.0 464 27.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 3.8e-07 62.0 464 27.2


User provided reference genes

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